miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 40364 0.72 0.559354
Target:  5'- uGUCGAuCGUCGgCGACG-UCGACGg-- -3'
miRNA:   3'- -CAGCU-GCAGCgGCUGCuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 7364 0.72 0.559354
Target:  5'- --aGGCGUCGCCacGACGGUCGGgcCGUCc -3'
miRNA:   3'- cagCUGCAGCGG--CUGCUAGCU--GUAGu -5'
23936 5' -53.6 NC_005262.1 + 30559 0.71 0.570054
Target:  5'- cUCGACGUgcgCGUCGAUG-UUGACGUCGg -3'
miRNA:   3'- cAGCUGCA---GCGGCUGCuAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 7874 0.71 0.591594
Target:  5'- cUCGA--UCGCCgGACGGUCGACGUa- -3'
miRNA:   3'- cAGCUgcAGCGG-CUGCUAGCUGUAgu -5'
23936 5' -53.6 NC_005262.1 + 42744 0.71 0.580803
Target:  5'- cUCGGCGcCuacgGCaCGACGAUCGugGUCGc -3'
miRNA:   3'- cAGCUGCaG----CG-GCUGCUAGCugUAGU- -5'
23936 5' -53.6 NC_005262.1 + 32815 0.71 0.580803
Target:  5'- uUCGACGUCGgccucauguCCGGCGAcgUCGGCGaCAa -3'
miRNA:   3'- cAGCUGCAGC---------GGCUGCU--AGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 906 0.7 0.667565
Target:  5'- cGUCGGCG-CGCUGGCGggUGAUgguGUCGc -3'
miRNA:   3'- -CAGCUGCaGCGGCUGCuaGCUG---UAGU- -5'
23936 5' -53.6 NC_005262.1 + 42922 0.7 0.667565
Target:  5'- cGUCGcguCGUCGuCCGGCGcgCG-CGUCGu -3'
miRNA:   3'- -CAGCu--GCAGC-GGCUGCuaGCuGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 21618 0.7 0.645873
Target:  5'- -gCGcCGUCGCCcaucacguacaGACGAUCGGCcgCGa -3'
miRNA:   3'- caGCuGCAGCGG-----------CUGCUAGCUGuaGU- -5'
23936 5' -53.6 NC_005262.1 + 41371 0.7 0.667565
Target:  5'- -aCGGgGUUGCCGGCGAgcaggCGGCGcUCGa -3'
miRNA:   3'- caGCUgCAGCGGCUGCUa----GCUGU-AGU- -5'
23936 5' -53.6 NC_005262.1 + 36027 0.69 0.710475
Target:  5'- -aUGACGUUGuaGACGGUCGGCGc-- -3'
miRNA:   3'- caGCUGCAGCggCUGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 28234 0.69 0.731523
Target:  5'- uUCG-CGcucuuucccgCGCCGGCGAgCGACAUCGc -3'
miRNA:   3'- cAGCuGCa---------GCGGCUGCUaGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 7642 0.69 0.678367
Target:  5'- uGUCGACGcCGgCGGCGA-CGGCuAUCu -3'
miRNA:   3'- -CAGCUGCaGCgGCUGCUaGCUG-UAGu -5'
23936 5' -53.6 NC_005262.1 + 33873 0.69 0.678367
Target:  5'- -aCGACGcCGCgcgcgaGACGAUCGuGCGUCGg -3'
miRNA:   3'- caGCUGCaGCGg-----CUGCUAGC-UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 29182 0.69 0.710475
Target:  5'- -gCGGcCGUCGCCGAgcUGAUgGAgGUCAu -3'
miRNA:   3'- caGCU-GCAGCGGCU--GCUAgCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 57476 0.69 0.731523
Target:  5'- -gCGGCGggCGCCGACGAgaggCGGCcggCGa -3'
miRNA:   3'- caGCUGCa-GCGGCUGCUa---GCUGua-GU- -5'
23936 5' -53.6 NC_005262.1 + 55925 0.69 0.721042
Target:  5'- cGUCGAC--CGuCCGGCGAUCGAgggcggcggcCGUCAg -3'
miRNA:   3'- -CAGCUGcaGC-GGCUGCUAGCU----------GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 47567 0.69 0.689127
Target:  5'- -gCGACGUCGcCCGACGAagcgaagCGGCuggcuuUCAg -3'
miRNA:   3'- caGCUGCAGC-GGCUGCUa------GCUGu-----AGU- -5'
23936 5' -53.6 NC_005262.1 + 56158 0.69 0.689127
Target:  5'- -cCGuCGcCGCCGGCG-UCGACAUUc -3'
miRNA:   3'- caGCuGCaGCGGCUGCuAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 39476 0.69 0.699833
Target:  5'- uGUCGAuCG-CGCCGACcAUCGcgagaaGCAUCAg -3'
miRNA:   3'- -CAGCU-GCaGCGGCUGcUAGC------UGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.