miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 47567 0.69 0.689127
Target:  5'- -gCGACGUCGcCCGACGAagcgaagCGGCuggcuuUCAg -3'
miRNA:   3'- caGCUGCAGC-GGCUGCUa------GCUGu-----AGU- -5'
23936 5' -53.6 NC_005262.1 + 33873 0.69 0.678367
Target:  5'- -aCGACGcCGCgcgcgaGACGAUCGuGCGUCGg -3'
miRNA:   3'- caGCUGCaGCGg-----CUGCUAGC-UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 7642 0.69 0.678367
Target:  5'- uGUCGACGcCGgCGGCGA-CGGCuAUCu -3'
miRNA:   3'- -CAGCUGCaGCgGCUGCUaGCUG-UAGu -5'
23936 5' -53.6 NC_005262.1 + 34649 0.68 0.762338
Target:  5'- -cCGGCGUCGCuCGACuGGcUCGACGa-- -3'
miRNA:   3'- caGCUGCAGCG-GCUG-CU-AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 46795 0.68 0.741907
Target:  5'- -aCGGCGgcgaGCCGAUGAcCGACGUgCAg -3'
miRNA:   3'- caGCUGCag--CGGCUGCUaGCUGUA-GU- -5'
23936 5' -53.6 NC_005262.1 + 56172 0.68 0.741907
Target:  5'- aUCGACGccgugaUCGCCGACuaccaugCGGCAUCc -3'
miRNA:   3'- cAGCUGC------AGCGGCUGcua----GCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 16363 0.68 0.752182
Target:  5'- aUCGGCGcCGCCG-CGuUCGGCAa-- -3'
miRNA:   3'- cAGCUGCaGCGGCuGCuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 51672 0.68 0.762338
Target:  5'- -cCGACuacaagcaGCCGGCGAUCGACAc-- -3'
miRNA:   3'- caGCUGcag-----CGGCUGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 32914 0.68 0.741907
Target:  5'- -gCGGCGUcaccauccggcCGCCGGCGAcuccUCGGcCGUCAu -3'
miRNA:   3'- caGCUGCA-----------GCGGCUGCU----AGCU-GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 46141 0.68 0.752182
Target:  5'- cUCGGCG-CGCUGGCGggCGAUcUCu -3'
miRNA:   3'- cAGCUGCaGCGGCUGCuaGCUGuAGu -5'
23936 5' -53.6 NC_005262.1 + 62735 0.68 0.782249
Target:  5'- aUCGGCG-CGCUGGCGGUCagcGCcgCAg -3'
miRNA:   3'- cAGCUGCaGCGGCUGCUAGc--UGuaGU- -5'
23936 5' -53.6 NC_005262.1 + 17053 0.68 0.782249
Target:  5'- -cCGGCGUgG-CGGCGAUCGAUccgGUCGu -3'
miRNA:   3'- caGCUGCAgCgGCUGCUAGCUG---UAGU- -5'
23936 5' -53.6 NC_005262.1 + 17219 0.68 0.782249
Target:  5'- --gGACGgCGCUGGCG-UCGugGUCGu -3'
miRNA:   3'- cagCUGCaGCGGCUGCuAGCugUAGU- -5'
23936 5' -53.6 NC_005262.1 + 36891 0.68 0.762338
Target:  5'- aUCGuCG-CGCgGAUGAUCGACAa-- -3'
miRNA:   3'- cAGCuGCaGCGgCUGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 51213 0.68 0.762338
Target:  5'- -gCGACGccUCGCCGGCGGcagcagcagcUCGACGa-- -3'
miRNA:   3'- caGCUGC--AGCGGCUGCU----------AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 14195 0.68 0.762338
Target:  5'- -gCGACGUCGCgGcCGAgCGACA-CAu -3'
miRNA:   3'- caGCUGCAGCGgCuGCUaGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 7533 0.68 0.782249
Target:  5'- uUCGGCGgcgCGUCGGCGcgcucgaCGACAUCc -3'
miRNA:   3'- cAGCUGCa--GCGGCUGCua-----GCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 10689 0.68 0.762338
Target:  5'- uUCGugaaGUCGCCGACGAU-GAUGUUg -3'
miRNA:   3'- cAGCug--CAGCGGCUGCUAgCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 30852 0.67 0.820162
Target:  5'- cGUCGACGUCGggaUGACGGcCGAggaGUCGc -3'
miRNA:   3'- -CAGCUGCAGCg--GCUGCUaGCUg--UAGU- -5'
23936 5' -53.6 NC_005262.1 + 49962 0.67 0.820162
Target:  5'- uUCGAgcCGaUCGCCGACGAgacagCGGCGc-- -3'
miRNA:   3'- cAGCU--GC-AGCGGCUGCUa----GCUGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.