miRNA display CGI


Results 1 - 20 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 23433 1.09 0.002091
Target:  5'- cGUCGACGUCGCCGACGAUCGACAUCAg -3'
miRNA:   3'- -CAGCUGCAGCGGCUGCUAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 15870 0.88 0.060722
Target:  5'- uUCGAUGUCGCCGGCGcUCGGCGUCu -3'
miRNA:   3'- cAGCUGCAGCGGCUGCuAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 11693 0.77 0.28657
Target:  5'- -aCGGCGUCGCCGA-GGUCGucCGUCAu -3'
miRNA:   3'- caGCUGCAGCGGCUgCUAGCu-GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30974 0.77 0.29376
Target:  5'- -cCGACGUCGCCGGacaUGAggcCGACGUCGa -3'
miRNA:   3'- caGCUGCAGCGGCU---GCUa--GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 31579 0.75 0.364779
Target:  5'- cUCGAaucCGaCGCCGGCGAUCG-CAUCAc -3'
miRNA:   3'- cAGCU---GCaGCGGCUGCUAGCuGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 11755 0.75 0.382091
Target:  5'- cUCGAUGUaggCGCCGGCGAUCGuCAUg- -3'
miRNA:   3'- cAGCUGCA---GCGGCUGCUAGCuGUAgu -5'
23936 5' -53.6 NC_005262.1 + 62823 0.75 0.382091
Target:  5'- -gCGACGU-GCCGACGAUCGGCc--- -3'
miRNA:   3'- caGCUGCAgCGGCUGCUAGCUGuagu -5'
23936 5' -53.6 NC_005262.1 + 45877 0.75 0.39095
Target:  5'- cGUUGGCGUCGgCGcCGAUCGGCGgcUCGc -3'
miRNA:   3'- -CAGCUGCAGCgGCuGCUAGCUGU--AGU- -5'
23936 5' -53.6 NC_005262.1 + 4439 0.74 0.418315
Target:  5'- cUCGGCGUUGCCGGCguacuuugcgauGAUCGcguucGCAUCAg -3'
miRNA:   3'- cAGCUGCAGCGGCUG------------CUAGC-----UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 54558 0.74 0.424866
Target:  5'- -gCGACGUCGCCGcguucgcgagcgagGCGcugaacgagaagAUCGACGUCAg -3'
miRNA:   3'- caGCUGCAGCGGC--------------UGC------------UAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 6555 0.74 0.437193
Target:  5'- uUCGGCGUguugcCGCCGACGAgCGGCGcgaUCAg -3'
miRNA:   3'- cAGCUGCA-----GCGGCUGCUaGCUGU---AGU- -5'
23936 5' -53.6 NC_005262.1 + 12956 0.74 0.446814
Target:  5'- -gCGACGgcaUCGCCGAcCGcUCGGCGUCGa -3'
miRNA:   3'- caGCUGC---AGCGGCU-GCuAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 52446 0.74 0.446814
Target:  5'- cGUCGACGU-GCCGcgcGCGAgCGGCGUCu -3'
miRNA:   3'- -CAGCUGCAgCGGC---UGCUaGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 22701 0.73 0.456551
Target:  5'- cUCGACGUgGCCGGCGGcgUUGACGa-- -3'
miRNA:   3'- cAGCUGCAgCGGCUGCU--AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 37872 0.73 0.457532
Target:  5'- aGUCGGCGUCGCgcguggCGACGuaccaugcgcgcugcUCGGCAUCGa -3'
miRNA:   3'- -CAGCUGCAGCG------GCUGCu--------------AGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 51523 0.73 0.476361
Target:  5'- cUCGGC-UCGCCGgccGCGAUCGACAg-- -3'
miRNA:   3'- cAGCUGcAGCGGC---UGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 49897 0.72 0.506846
Target:  5'- gGUCGAuUGUCGUCGGCGA-CGACGggCAg -3'
miRNA:   3'- -CAGCU-GCAGCGGCUGCUaGCUGUa-GU- -5'
23936 5' -53.6 NC_005262.1 + 15970 0.72 0.517193
Target:  5'- gGUCGACc-UGCUGGCGAUCGACGagaUCGg -3'
miRNA:   3'- -CAGCUGcaGCGGCUGCUAGCUGU---AGU- -5'
23936 5' -53.6 NC_005262.1 + 13419 0.72 0.527624
Target:  5'- uUCG-CGUCGCC-ACGGUCGACGa-- -3'
miRNA:   3'- cAGCuGCAGCGGcUGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 40364 0.72 0.559354
Target:  5'- uGUCGAuCGUCGgCGACG-UCGACGg-- -3'
miRNA:   3'- -CAGCU-GCAGCgGCUGCuAGCUGUagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.