miRNA display CGI


Results 61 - 80 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 13814 0.67 0.801551
Target:  5'- aUCGGCGggagcgggCGCCGcugucucgucgGCGAUCGGC-UCGa -3'
miRNA:   3'- cAGCUGCa-------GCGGC-----------UGCUAGCUGuAGU- -5'
23936 5' -53.6 NC_005262.1 + 26698 0.67 0.801551
Target:  5'- -cCGugGcCGgcCCGAuCGGUCGACAUCc -3'
miRNA:   3'- caGCugCaGC--GGCU-GCUAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 60403 0.67 0.810948
Target:  5'- cGUCGGCGgcauggCGCaCGugG-UCGAgAUCGc -3'
miRNA:   3'- -CAGCUGCa-----GCG-GCugCuAGCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30426 0.67 0.810948
Target:  5'- cGUCGACGaUCacgGCCGGCGGguugucgaUCGGCggCAc -3'
miRNA:   3'- -CAGCUGC-AG---CGGCUGCU--------AGCUGuaGU- -5'
23936 5' -53.6 NC_005262.1 + 36422 0.67 0.810948
Target:  5'- uUCG-CGgaggCGCCGACGA-CGGCcUCGg -3'
miRNA:   3'- cAGCuGCa---GCGGCUGCUaGCUGuAGU- -5'
23936 5' -53.6 NC_005262.1 + 12915 0.67 0.810948
Target:  5'- aUUGACGagcgCGCCGuGCGAUUG-CGUCGg -3'
miRNA:   3'- cAGCUGCa---GCGGC-UGCUAGCuGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 49962 0.67 0.820162
Target:  5'- uUCGAgcCGaUCGCCGACGAgacagCGGCGc-- -3'
miRNA:   3'- cAGCU--GC-AGCGGCUGCUa----GCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 58566 0.67 0.820162
Target:  5'- -gCGGCGUCGacgccaCGGCGAUCGuGCAg-- -3'
miRNA:   3'- caGCUGCAGCg-----GCUGCUAGC-UGUagu -5'
23936 5' -53.6 NC_005262.1 + 52626 0.67 0.820162
Target:  5'- -gCGGCGUCGUCGGCGuuGUCG-CAg-- -3'
miRNA:   3'- caGCUGCAGCGGCUGC--UAGCuGUagu -5'
23936 5' -53.6 NC_005262.1 + 30852 0.67 0.820162
Target:  5'- cGUCGACGUCGggaUGACGGcCGAggaGUCGc -3'
miRNA:   3'- -CAGCUGCAGCg--GCUGCUaGCUg--UAGU- -5'
23936 5' -53.6 NC_005262.1 + 36837 0.67 0.829183
Target:  5'- -gCGACGUauggUGCCGACGAcaCGACggCGg -3'
miRNA:   3'- caGCUGCA----GCGGCUGCUa-GCUGuaGU- -5'
23936 5' -53.6 NC_005262.1 + 20363 0.67 0.829183
Target:  5'- -gCG-CGUCGCCGuCGAUCggauaGACGUUg -3'
miRNA:   3'- caGCuGCAGCGGCuGCUAG-----CUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 21537 0.67 0.829183
Target:  5'- -cCGcuCGUCGCCGcagugagcgcgGCGcUCGGCAUCGg -3'
miRNA:   3'- caGCu-GCAGCGGC-----------UGCuAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 6433 0.66 0.835378
Target:  5'- uGUCGGCGUCcuucguguaguucgGCucCGGCGAgacgcCGGCAUCGa -3'
miRNA:   3'- -CAGCUGCAG--------------CG--GCUGCUa----GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 8030 0.66 0.838002
Target:  5'- -aCGAUGUCGCCGuACuGGUUGGCccacgcGUCGa -3'
miRNA:   3'- caGCUGCAGCGGC-UG-CUAGCUG------UAGU- -5'
23936 5' -53.6 NC_005262.1 + 52874 0.66 0.838002
Target:  5'- cUCGAUGUCGaCGACGAggCGAaCGUUc -3'
miRNA:   3'- cAGCUGCAGCgGCUGCUa-GCU-GUAGu -5'
23936 5' -53.6 NC_005262.1 + 33648 0.66 0.838002
Target:  5'- cGUCGGCaucCGCCGGCGcuUCGGCGa-- -3'
miRNA:   3'- -CAGCUGca-GCGGCUGCu-AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 5157 0.66 0.838002
Target:  5'- cUCGGCG-CGCUGAuCGGUgacggcCGGCGUCGc -3'
miRNA:   3'- cAGCUGCaGCGGCU-GCUA------GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 44359 0.66 0.838002
Target:  5'- cGUCGACG-CGCUGAaguUCGACGa-- -3'
miRNA:   3'- -CAGCUGCaGCGGCUgcuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 41095 0.66 0.846609
Target:  5'- cGUCaACGcCGCCGGCcacGUCGAgAUCGu -3'
miRNA:   3'- -CAGcUGCaGCGGCUGc--UAGCUgUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.