Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 5' | -53.6 | NC_005262.1 | + | 9342 | 0.66 | 0.878766 |
Target: 5'- cUCGACGUugCGCUGAuacuucCGGUCGGCGc-- -3' miRNA: 3'- cAGCUGCA--GCGGCU------GCUAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 24323 | 0.66 | 0.878766 |
Target: 5'- -gCGAUgGUCGgCG-CGAUCGACAUg- -3' miRNA: 3'- caGCUG-CAGCgGCuGCUAGCUGUAgu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 12574 | 0.66 | 0.878766 |
Target: 5'- cGUCGAgcugcugcUGcCGCCGGCGA--GGCGUCGc -3' miRNA: 3'- -CAGCU--------GCaGCGGCUGCUagCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 30481 | 0.66 | 0.878766 |
Target: 5'- aUCGACGgCGCCGAa-AUCcuGCGUCAg -3' miRNA: 3'- cAGCUGCaGCGGCUgcUAGc-UGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 33338 | 0.66 | 0.878766 |
Target: 5'- cGUCGcugcGCGgcaccgUGCCGcCGAUCGACAa-- -3' miRNA: 3'- -CAGC----UGCa-----GCGGCuGCUAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 29770 | 0.66 | 0.878766 |
Target: 5'- aUCGACGcggCGCaCGAUGcggccCGGCGUCAc -3' miRNA: 3'- cAGCUGCa--GCG-GCUGCua---GCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 20092 | 0.66 | 0.878766 |
Target: 5'- uGUCGgugagcGCGUCGCCGcGCGAauUCGGCc--- -3' miRNA: 3'- -CAGC------UGCAGCGGC-UGCU--AGCUGuagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 40536 | 0.66 | 0.878766 |
Target: 5'- -gCGACGggacgCaCCGAUGAUCGACG-CGa -3' miRNA: 3'- caGCUGCa----GcGGCUGCUAGCUGUaGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 41677 | 0.66 | 0.878766 |
Target: 5'- --aGACGaUUGCCGGCcacgugcagcaGGUCGACGUUg -3' miRNA: 3'- cagCUGC-AGCGGCUG-----------CUAGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 54116 | 0.66 | 0.874185 |
Target: 5'- cUCGACGUCGaCGGCGcccUCGccuacucgcucgagcACAUCAa -3' miRNA: 3'- cAGCUGCAGCgGCUGCu--AGC---------------UGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 44768 | 0.66 | 0.871083 |
Target: 5'- uUCGACaUCGCCaGCGcgCGGCAg-- -3' miRNA: 3'- cAGCUGcAGCGGcUGCuaGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 24778 | 0.66 | 0.871083 |
Target: 5'- -gCGGCGa-GCCgGGCGAgcacuUCGACAUCGc -3' miRNA: 3'- caGCUGCagCGG-CUGCU-----AGCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 32313 | 0.66 | 0.871083 |
Target: 5'- --gGACGUCGaCGGCGAggUCGGCGg-- -3' miRNA: 3'- cagCUGCAGCgGCUGCU--AGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 17320 | 0.66 | 0.871083 |
Target: 5'- uGUCGACGggcugCGUCGugGccggcgCGGCAUUc -3' miRNA: 3'- -CAGCUGCa----GCGGCugCua----GCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 18043 | 0.66 | 0.871083 |
Target: 5'- aUCGGCGUCGCguucGCGGgaaCGAUGUCGg -3' miRNA: 3'- cAGCUGCAGCGgc--UGCUa--GCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 51122 | 0.66 | 0.871083 |
Target: 5'- cUCGACG-CGCCGGuCGAcaaggcgcUCGACGcCGu -3' miRNA: 3'- cAGCUGCaGCGGCU-GCU--------AGCUGUaGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 30900 | 0.66 | 0.863157 |
Target: 5'- -gCGACGcCGCCGGCuuGGcCGACGUUc -3' miRNA: 3'- caGCUGCaGCGGCUG--CUaGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 30022 | 0.66 | 0.863157 |
Target: 5'- -aUGAgGUCGguagCGGCGAUCGGCAUg- -3' miRNA: 3'- caGCUgCAGCg---GCUGCUAGCUGUAgu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 29146 | 0.66 | 0.863157 |
Target: 5'- aUCGACGagGCCGagugGCGcgCGACcaugcGUCAg -3' miRNA: 3'- cAGCUGCagCGGC----UGCuaGCUG-----UAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 56522 | 0.66 | 0.863157 |
Target: 5'- --gGACG-CGCCGugGuuccCGGCAUCc -3' miRNA: 3'- cagCUGCaGCGGCugCua--GCUGUAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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