Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 5' | -53.6 | NC_005262.1 | + | 58566 | 0.67 | 0.820162 |
Target: 5'- -gCGGCGUCGacgccaCGGCGAUCGuGCAg-- -3' miRNA: 3'- caGCUGCAGCg-----GCUGCUAGC-UGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 30852 | 0.67 | 0.820162 |
Target: 5'- cGUCGACGUCGggaUGACGGcCGAggaGUCGc -3' miRNA: 3'- -CAGCUGCAGCg--GCUGCUaGCUg--UAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 49962 | 0.67 | 0.820162 |
Target: 5'- uUCGAgcCGaUCGCCGACGAgacagCGGCGc-- -3' miRNA: 3'- cAGCU--GC-AGCGGCUGCUa----GCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 60403 | 0.67 | 0.810948 |
Target: 5'- cGUCGGCGgcauggCGCaCGugG-UCGAgAUCGc -3' miRNA: 3'- -CAGCUGCa-----GCG-GCugCuAGCUgUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 30426 | 0.67 | 0.810948 |
Target: 5'- cGUCGACGaUCacgGCCGGCGGguugucgaUCGGCggCAc -3' miRNA: 3'- -CAGCUGC-AG---CGGCUGCU--------AGCUGuaGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 36422 | 0.67 | 0.810948 |
Target: 5'- uUCG-CGgaggCGCCGACGA-CGGCcUCGg -3' miRNA: 3'- cAGCuGCa---GCGGCUGCUaGCUGuAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 12915 | 0.67 | 0.810948 |
Target: 5'- aUUGACGagcgCGCCGuGCGAUUG-CGUCGg -3' miRNA: 3'- cAGCUGCa---GCGGC-UGCUAGCuGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 26698 | 0.67 | 0.801551 |
Target: 5'- -cCGugGcCGgcCCGAuCGGUCGACAUCc -3' miRNA: 3'- caGCugCaGC--GGCU-GCUAGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 13814 | 0.67 | 0.801551 |
Target: 5'- aUCGGCGggagcgggCGCCGcugucucgucgGCGAUCGGC-UCGa -3' miRNA: 3'- cAGCUGCa-------GCGGC-----------UGCUAGCUGuAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 33735 | 0.67 | 0.801551 |
Target: 5'- cGUCGuCGUCGCCGGCa----GCAUCGu -3' miRNA: 3'- -CAGCuGCAGCGGCUGcuagcUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 33581 | 0.67 | 0.797743 |
Target: 5'- -gUGAUGUCGCCGuugucgaacugcuCGAUCaGCGUCGa -3' miRNA: 3'- caGCUGCAGCGGCu------------GCUAGcUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 7533 | 0.68 | 0.782249 |
Target: 5'- uUCGGCGgcgCGUCGGCGcgcucgaCGACAUCc -3' miRNA: 3'- cAGCUGCa--GCGGCUGCua-----GCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 62735 | 0.68 | 0.782249 |
Target: 5'- aUCGGCG-CGCUGGCGGUCagcGCcgCAg -3' miRNA: 3'- cAGCUGCaGCGGCUGCUAGc--UGuaGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 17219 | 0.68 | 0.782249 |
Target: 5'- --gGACGgCGCUGGCG-UCGugGUCGu -3' miRNA: 3'- cagCUGCaGCGGCUGCuAGCugUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 17053 | 0.68 | 0.782249 |
Target: 5'- -cCGGCGUgG-CGGCGAUCGAUccgGUCGu -3' miRNA: 3'- caGCUGCAgCgGCUGCUAGCUG---UAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 36891 | 0.68 | 0.762338 |
Target: 5'- aUCGuCG-CGCgGAUGAUCGACAa-- -3' miRNA: 3'- cAGCuGCaGCGgCUGCUAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 51213 | 0.68 | 0.762338 |
Target: 5'- -gCGACGccUCGCCGGCGGcagcagcagcUCGACGa-- -3' miRNA: 3'- caGCUGC--AGCGGCUGCU----------AGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 14195 | 0.68 | 0.762338 |
Target: 5'- -gCGACGUCGCgGcCGAgCGACA-CAu -3' miRNA: 3'- caGCUGCAGCGgCuGCUaGCUGUaGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 51672 | 0.68 | 0.762338 |
Target: 5'- -cCGACuacaagcaGCCGGCGAUCGACAc-- -3' miRNA: 3'- caGCUGcag-----CGGCUGCUAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 34649 | 0.68 | 0.762338 |
Target: 5'- -cCGGCGUCGCuCGACuGGcUCGACGa-- -3' miRNA: 3'- caGCUGCAGCG-GCUG-CU-AGCUGUagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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