miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 906 0.7 0.667565
Target:  5'- cGUCGGCG-CGCUGGCGggUGAUgguGUCGc -3'
miRNA:   3'- -CAGCUGCaGCGGCUGCuaGCUG---UAGU- -5'
23936 5' -53.6 NC_005262.1 + 967 0.69 0.678367
Target:  5'- cGUCGAgcCGUgGCCGAUcGUCGGCAcgUCGc -3'
miRNA:   3'- -CAGCU--GCAgCGGCUGcUAGCUGU--AGU- -5'
23936 5' -53.6 NC_005262.1 + 4439 0.74 0.418315
Target:  5'- cUCGGCGUUGCCGGCguacuuugcgauGAUCGcguucGCAUCAg -3'
miRNA:   3'- cAGCUGCAGCGGCUG------------CUAGC-----UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 5157 0.66 0.838002
Target:  5'- cUCGGCG-CGCUGAuCGGUgacggcCGGCGUCGc -3'
miRNA:   3'- cAGCUGCaGCGGCU-GCUA------GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 6140 0.66 0.854997
Target:  5'- aGUCGAuCGU-GCCGcCGAUCGA-GUCGu -3'
miRNA:   3'- -CAGCU-GCAgCGGCuGCUAGCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 6433 0.66 0.835378
Target:  5'- uGUCGGCGUCcuucguguaguucgGCucCGGCGAgacgcCGGCAUCGa -3'
miRNA:   3'- -CAGCUGCAG--------------CG--GCUGCUa----GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 6555 0.74 0.437193
Target:  5'- uUCGGCGUguugcCGCCGACGAgCGGCGcgaUCAg -3'
miRNA:   3'- cAGCUGCA-----GCGGCUGCUaGCUGU---AGU- -5'
23936 5' -53.6 NC_005262.1 + 7364 0.72 0.559354
Target:  5'- --aGGCGUCGCCacGACGGUCGGgcCGUCc -3'
miRNA:   3'- cagCUGCAGCGG--CUGCUAGCU--GUAGu -5'
23936 5' -53.6 NC_005262.1 + 7533 0.68 0.782249
Target:  5'- uUCGGCGgcgCGUCGGCGcgcucgaCGACAUCc -3'
miRNA:   3'- cAGCUGCa--GCGGCUGCua-----GCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 7642 0.69 0.678367
Target:  5'- uGUCGACGcCGgCGGCGA-CGGCuAUCu -3'
miRNA:   3'- -CAGCUGCaGCgGCUGCUaGCUG-UAGu -5'
23936 5' -53.6 NC_005262.1 + 7874 0.71 0.591594
Target:  5'- cUCGA--UCGCCgGACGGUCGACGUa- -3'
miRNA:   3'- cAGCUgcAGCGG-CUGCUAGCUGUAgu -5'
23936 5' -53.6 NC_005262.1 + 8030 0.66 0.838002
Target:  5'- -aCGAUGUCGCCGuACuGGUUGGCccacgcGUCGa -3'
miRNA:   3'- caGCUGCAGCGGC-UG-CUAGCUG------UAGU- -5'
23936 5' -53.6 NC_005262.1 + 9016 0.66 0.849991
Target:  5'- -gCGACGUCGuuGGCcuucucggucgccUCGGCGUCGa -3'
miRNA:   3'- caGCUGCAGCggCUGcu-----------AGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 9342 0.66 0.878766
Target:  5'- cUCGACGUugCGCUGAuacuucCGGUCGGCGc-- -3'
miRNA:   3'- cAGCUGCA--GCGGCU------GCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 10689 0.68 0.762338
Target:  5'- uUCGugaaGUCGCCGACGAU-GAUGUUg -3'
miRNA:   3'- cAGCug--CAGCGGCUGCUAgCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 11693 0.77 0.28657
Target:  5'- -aCGGCGUCGCCGA-GGUCGucCGUCAu -3'
miRNA:   3'- caGCUGCAGCGGCUgCUAGCu-GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 11755 0.75 0.382091
Target:  5'- cUCGAUGUaggCGCCGGCGAUCGuCAUg- -3'
miRNA:   3'- cAGCUGCA---GCGGCUGCUAGCuGUAgu -5'
23936 5' -53.6 NC_005262.1 + 12574 0.66 0.878766
Target:  5'- cGUCGAgcugcugcUGcCGCCGGCGA--GGCGUCGc -3'
miRNA:   3'- -CAGCU--------GCaGCGGCUGCUagCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 12915 0.67 0.810948
Target:  5'- aUUGACGagcgCGCCGuGCGAUUG-CGUCGg -3'
miRNA:   3'- cAGCUGCa---GCGGC-UGCUAGCuGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 12956 0.74 0.446814
Target:  5'- -gCGACGgcaUCGCCGAcCGcUCGGCGUCGa -3'
miRNA:   3'- caGCUGC---AGCGGCU-GCuAGCUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.