miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 13419 0.72 0.527624
Target:  5'- uUCG-CGUCGCC-ACGGUCGACGa-- -3'
miRNA:   3'- cAGCuGCAGCGGcUGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 13814 0.67 0.801551
Target:  5'- aUCGGCGggagcgggCGCCGcugucucgucgGCGAUCGGC-UCGa -3'
miRNA:   3'- cAGCUGCa-------GCGGC-----------UGCUAGCUGuAGU- -5'
23936 5' -53.6 NC_005262.1 + 13899 0.66 0.863157
Target:  5'- -cCGuCGUCGCCGACGAcaaUCuGACcgUu -3'
miRNA:   3'- caGCuGCAGCGGCUGCU---AG-CUGuaGu -5'
23936 5' -53.6 NC_005262.1 + 14195 0.68 0.762338
Target:  5'- -gCGACGUCGCgGcCGAgCGACA-CAu -3'
miRNA:   3'- caGCUGCAGCGgCuGCUaGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 15870 0.88 0.060722
Target:  5'- uUCGAUGUCGCCGGCGcUCGGCGUCu -3'
miRNA:   3'- cAGCUGCAGCGGCUGCuAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 15970 0.72 0.517193
Target:  5'- gGUCGACc-UGCUGGCGAUCGACGagaUCGg -3'
miRNA:   3'- -CAGCUGcaGCGGCUGCUAGCUGU---AGU- -5'
23936 5' -53.6 NC_005262.1 + 16363 0.68 0.752182
Target:  5'- aUCGGCGcCGCCG-CGuUCGGCAa-- -3'
miRNA:   3'- cAGCUGCaGCGGCuGCuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 17053 0.68 0.782249
Target:  5'- -cCGGCGUgG-CGGCGAUCGAUccgGUCGu -3'
miRNA:   3'- caGCUGCAgCgGCUGCUAGCUG---UAGU- -5'
23936 5' -53.6 NC_005262.1 + 17126 0.66 0.862352
Target:  5'- aUCGGCGggcgucggUGCCGGCGccaugcugccgcuGUCGGcCAUCAg -3'
miRNA:   3'- cAGCUGCa-------GCGGCUGC-------------UAGCU-GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 17219 0.68 0.782249
Target:  5'- --gGACGgCGCUGGCG-UCGugGUCGu -3'
miRNA:   3'- cagCUGCaGCGGCUGCuAGCugUAGU- -5'
23936 5' -53.6 NC_005262.1 + 17320 0.66 0.871083
Target:  5'- uGUCGACGggcugCGUCGugGccggcgCGGCAUUc -3'
miRNA:   3'- -CAGCUGCa----GCGGCugCua----GCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 18043 0.66 0.871083
Target:  5'- aUCGGCGUCGCguucGCGGgaaCGAUGUCGg -3'
miRNA:   3'- cAGCUGCAGCGgc--UGCUa--GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 19582 0.72 0.563627
Target:  5'- aGUCGGCcgagaugauguauucGUCGCCuucggugcgaguGGCGGUCGGCGUCc -3'
miRNA:   3'- -CAGCUG---------------CAGCGG------------CUGCUAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 20092 0.66 0.878766
Target:  5'- uGUCGgugagcGCGUCGCCGcGCGAauUCGGCc--- -3'
miRNA:   3'- -CAGC------UGCAGCGGC-UGCU--AGCUGuagu -5'
23936 5' -53.6 NC_005262.1 + 20363 0.67 0.829183
Target:  5'- -gCG-CGUCGCCGuCGAUCggauaGACGUUg -3'
miRNA:   3'- caGCuGCAGCGGCuGCUAG-----CUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 21537 0.67 0.829183
Target:  5'- -cCGcuCGUCGCCGcagugagcgcgGCGcUCGGCAUCGg -3'
miRNA:   3'- caGCu-GCAGCGGC-----------UGCuAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 21618 0.7 0.645873
Target:  5'- -gCGcCGUCGCCcaucacguacaGACGAUCGGCcgCGa -3'
miRNA:   3'- caGCuGCAGCGG-----------CUGCUAGCUGuaGU- -5'
23936 5' -53.6 NC_005262.1 + 22701 0.73 0.456551
Target:  5'- cUCGACGUgGCCGGCGGcgUUGACGa-- -3'
miRNA:   3'- cAGCUGCAgCGGCUGCU--AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 23433 1.09 0.002091
Target:  5'- cGUCGACGUCGCCGACGAUCGACAUCAg -3'
miRNA:   3'- -CAGCUGCAGCGGCUGCUAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 24323 0.66 0.878766
Target:  5'- -gCGAUgGUCGgCG-CGAUCGACAUg- -3'
miRNA:   3'- caGCUG-CAGCgGCuGCUAGCUGUAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.