miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 24778 0.66 0.871083
Target:  5'- -gCGGCGa-GCCgGGCGAgcacuUCGACAUCGc -3'
miRNA:   3'- caGCUGCagCGG-CUGCU-----AGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 26698 0.67 0.801551
Target:  5'- -cCGugGcCGgcCCGAuCGGUCGACAUCc -3'
miRNA:   3'- caGCugCaGC--GGCU-GCUAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 28234 0.69 0.731523
Target:  5'- uUCG-CGcucuuucccgCGCCGGCGAgCGACAUCGc -3'
miRNA:   3'- cAGCuGCa---------GCGGCUGCUaGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 29146 0.66 0.863157
Target:  5'- aUCGACGagGCCGagugGCGcgCGACcaugcGUCAg -3'
miRNA:   3'- cAGCUGCagCGGC----UGCuaGCUG-----UAGU- -5'
23936 5' -53.6 NC_005262.1 + 29182 0.69 0.710475
Target:  5'- -gCGGcCGUCGCCGAgcUGAUgGAgGUCAu -3'
miRNA:   3'- caGCU-GCAGCGGCU--GCUAgCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 29770 0.66 0.878766
Target:  5'- aUCGACGcggCGCaCGAUGcggccCGGCGUCAc -3'
miRNA:   3'- cAGCUGCa--GCG-GCUGCua---GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30022 0.66 0.863157
Target:  5'- -aUGAgGUCGguagCGGCGAUCGGCAUg- -3'
miRNA:   3'- caGCUgCAGCg---GCUGCUAGCUGUAgu -5'
23936 5' -53.6 NC_005262.1 + 30426 0.67 0.810948
Target:  5'- cGUCGACGaUCacgGCCGGCGGguugucgaUCGGCggCAc -3'
miRNA:   3'- -CAGCUGC-AG---CGGCUGCU--------AGCUGuaGU- -5'
23936 5' -53.6 NC_005262.1 + 30481 0.66 0.878766
Target:  5'- aUCGACGgCGCCGAa-AUCcuGCGUCAg -3'
miRNA:   3'- cAGCUGCaGCGGCUgcUAGc-UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30559 0.71 0.570054
Target:  5'- cUCGACGUgcgCGUCGAUG-UUGACGUCGg -3'
miRNA:   3'- cAGCUGCA---GCGGCUGCuAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30622 0.69 0.689127
Target:  5'- aUCGAgcCGcCGCCGACGcUCGGCAa-- -3'
miRNA:   3'- cAGCU--GCaGCGGCUGCuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 30749 0.66 0.846609
Target:  5'- --aGAUGUCgGCCGcCGAUCGugAUg- -3'
miRNA:   3'- cagCUGCAG-CGGCuGCUAGCugUAgu -5'
23936 5' -53.6 NC_005262.1 + 30852 0.67 0.820162
Target:  5'- cGUCGACGUCGggaUGACGGcCGAggaGUCGc -3'
miRNA:   3'- -CAGCUGCAGCg--GCUGCUaGCUg--UAGU- -5'
23936 5' -53.6 NC_005262.1 + 30900 0.66 0.863157
Target:  5'- -gCGACGcCGCCGGCuuGGcCGACGUUc -3'
miRNA:   3'- caGCUGCaGCGGCUG--CUaGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 30974 0.77 0.29376
Target:  5'- -cCGACGUCGCCGGacaUGAggcCGACGUCGa -3'
miRNA:   3'- caGCUGCAGCGGCU---GCUa--GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 31579 0.75 0.364779
Target:  5'- cUCGAaucCGaCGCCGGCGAUCG-CAUCAc -3'
miRNA:   3'- cAGCU---GCaGCGGCUGCUAGCuGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 32313 0.66 0.871083
Target:  5'- --gGACGUCGaCGGCGAggUCGGCGg-- -3'
miRNA:   3'- cagCUGCAGCgGCUGCU--AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 32815 0.71 0.580803
Target:  5'- uUCGACGUCGgccucauguCCGGCGAcgUCGGCGaCAa -3'
miRNA:   3'- cAGCUGCAGC---------GGCUGCU--AGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 32914 0.68 0.741907
Target:  5'- -gCGGCGUcaccauccggcCGCCGGCGAcuccUCGGcCGUCAu -3'
miRNA:   3'- caGCUGCA-----------GCGGCUGCU----AGCU-GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 33325 0.66 0.846609
Target:  5'- uUCGGCGcCGUCGAUG-UUGGCGUUc -3'
miRNA:   3'- cAGCUGCaGCGGCUGCuAGCUGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.