miRNA display CGI


Results 61 - 80 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 33338 0.66 0.878766
Target:  5'- cGUCGcugcGCGgcaccgUGCCGcCGAUCGACAa-- -3'
miRNA:   3'- -CAGC----UGCa-----GCGGCuGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 33581 0.67 0.797743
Target:  5'- -gUGAUGUCGCCGuugucgaacugcuCGAUCaGCGUCGa -3'
miRNA:   3'- caGCUGCAGCGGCu------------GCUAGcUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 33648 0.66 0.838002
Target:  5'- cGUCGGCaucCGCCGGCGcuUCGGCGa-- -3'
miRNA:   3'- -CAGCUGca-GCGGCUGCu-AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 33735 0.67 0.801551
Target:  5'- cGUCGuCGUCGCCGGCa----GCAUCGu -3'
miRNA:   3'- -CAGCuGCAGCGGCUGcuagcUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 33873 0.69 0.678367
Target:  5'- -aCGACGcCGCgcgcgaGACGAUCGuGCGUCGg -3'
miRNA:   3'- caGCUGCaGCGg-----CUGCUAGC-UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 34649 0.68 0.762338
Target:  5'- -cCGGCGUCGCuCGACuGGcUCGACGa-- -3'
miRNA:   3'- caGCUGCAGCG-GCUG-CU-AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 36027 0.69 0.710475
Target:  5'- -aUGACGUUGuaGACGGUCGGCGc-- -3'
miRNA:   3'- caGCUGCAGCggCUGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 36422 0.67 0.810948
Target:  5'- uUCG-CGgaggCGCCGACGA-CGGCcUCGg -3'
miRNA:   3'- cAGCuGCa---GCGGCUGCUaGCUGuAGU- -5'
23936 5' -53.6 NC_005262.1 + 36837 0.67 0.829183
Target:  5'- -gCGACGUauggUGCCGACGAcaCGACggCGg -3'
miRNA:   3'- caGCUGCA----GCGGCUGCUa-GCUGuaGU- -5'
23936 5' -53.6 NC_005262.1 + 36891 0.68 0.762338
Target:  5'- aUCGuCG-CGCgGAUGAUCGACAa-- -3'
miRNA:   3'- cAGCuGCaGCGgCUGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 37872 0.73 0.457532
Target:  5'- aGUCGGCGUCGCgcguggCGACGuaccaugcgcgcugcUCGGCAUCGa -3'
miRNA:   3'- -CAGCUGCAGCG------GCUGCu--------------AGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 39476 0.69 0.699833
Target:  5'- uGUCGAuCG-CGCCGACcAUCGcgagaaGCAUCAg -3'
miRNA:   3'- -CAGCU-GCaGCGGCUGcUAGC------UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 40364 0.72 0.559354
Target:  5'- uGUCGAuCGUCGgCGACG-UCGACGg-- -3'
miRNA:   3'- -CAGCU-GCAGCgGCUGCuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 40536 0.66 0.878766
Target:  5'- -gCGACGggacgCaCCGAUGAUCGACG-CGa -3'
miRNA:   3'- caGCUGCa----GcGGCUGCUAGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 41095 0.66 0.846609
Target:  5'- cGUCaACGcCGCCGGCcacGUCGAgAUCGu -3'
miRNA:   3'- -CAGcUGCaGCGGCUGc--UAGCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 41371 0.7 0.667565
Target:  5'- -aCGGgGUUGCCGGCGAgcaggCGGCGcUCGa -3'
miRNA:   3'- caGCUgCAGCGGCUGCUa----GCUGU-AGU- -5'
23936 5' -53.6 NC_005262.1 + 41677 0.66 0.878766
Target:  5'- --aGACGaUUGCCGGCcacgugcagcaGGUCGACGUUg -3'
miRNA:   3'- cagCUGC-AGCGGCUG-----------CUAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 42744 0.71 0.580803
Target:  5'- cUCGGCGcCuacgGCaCGACGAUCGugGUCGc -3'
miRNA:   3'- cAGCUGCaG----CG-GCUGCUAGCugUAGU- -5'
23936 5' -53.6 NC_005262.1 + 42922 0.7 0.667565
Target:  5'- cGUCGcguCGUCGuCCGGCGcgCG-CGUCGu -3'
miRNA:   3'- -CAGCu--GCAGC-GGCUGCuaGCuGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 44359 0.66 0.838002
Target:  5'- cGUCGACG-CGCUGAaguUCGACGa-- -3'
miRNA:   3'- -CAGCUGCaGCGGCUgcuAGCUGUagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.