miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 62823 0.75 0.382091
Target:  5'- -gCGACGU-GCCGACGAUCGGCc--- -3'
miRNA:   3'- caGCUGCAgCGGCUGCUAGCUGuagu -5'
23936 5' -53.6 NC_005262.1 + 62735 0.68 0.782249
Target:  5'- aUCGGCG-CGCUGGCGGUCagcGCcgCAg -3'
miRNA:   3'- cAGCUGCaGCGGCUGCUAGc--UGuaGU- -5'
23936 5' -53.6 NC_005262.1 + 60403 0.67 0.810948
Target:  5'- cGUCGGCGgcauggCGCaCGugG-UCGAgAUCGc -3'
miRNA:   3'- -CAGCUGCa-----GCG-GCugCuAGCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 58903 0.66 0.846609
Target:  5'- -cCGACGUcaCGCCGAagcaGGUCGA-GUCGg -3'
miRNA:   3'- caGCUGCA--GCGGCUg---CUAGCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 58566 0.67 0.820162
Target:  5'- -gCGGCGUCGacgccaCGGCGAUCGuGCAg-- -3'
miRNA:   3'- caGCUGCAGCg-----GCUGCUAGC-UGUagu -5'
23936 5' -53.6 NC_005262.1 + 57476 0.69 0.731523
Target:  5'- -gCGGCGggCGCCGACGAgaggCGGCcggCGa -3'
miRNA:   3'- caGCUGCa-GCGGCUGCUa---GCUGua-GU- -5'
23936 5' -53.6 NC_005262.1 + 56734 0.66 0.854168
Target:  5'- cGUCGGCGUUcgacaugGCCGcCGcgCuGGCGUCGg -3'
miRNA:   3'- -CAGCUGCAG-------CGGCuGCuaG-CUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 56522 0.66 0.863157
Target:  5'- --gGACG-CGCCGugGuuccCGGCAUCc -3'
miRNA:   3'- cagCUGCaGCGGCugCua--GCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 56172 0.68 0.741907
Target:  5'- aUCGACGccgugaUCGCCGACuaccaugCGGCAUCc -3'
miRNA:   3'- cAGCUGC------AGCGGCUGcua----GCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 56158 0.69 0.689127
Target:  5'- -cCGuCGcCGCCGGCG-UCGACAUUc -3'
miRNA:   3'- caGCuGCaGCGGCUGCuAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 55925 0.69 0.721042
Target:  5'- cGUCGAC--CGuCCGGCGAUCGAgggcggcggcCGUCAg -3'
miRNA:   3'- -CAGCUGcaGC-GGCUGCUAGCU----------GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 54558 0.74 0.424866
Target:  5'- -gCGACGUCGCCGcguucgcgagcgagGCGcugaacgagaagAUCGACGUCAg -3'
miRNA:   3'- caGCUGCAGCGGC--------------UGC------------UAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 54116 0.66 0.874185
Target:  5'- cUCGACGUCGaCGGCGcccUCGccuacucgcucgagcACAUCAa -3'
miRNA:   3'- cAGCUGCAGCgGCUGCu--AGC---------------UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 52874 0.66 0.838002
Target:  5'- cUCGAUGUCGaCGACGAggCGAaCGUUc -3'
miRNA:   3'- cAGCUGCAGCgGCUGCUa-GCU-GUAGu -5'
23936 5' -53.6 NC_005262.1 + 52626 0.67 0.820162
Target:  5'- -gCGGCGUCGUCGGCGuuGUCG-CAg-- -3'
miRNA:   3'- caGCUGCAGCGGCUGC--UAGCuGUagu -5'
23936 5' -53.6 NC_005262.1 + 52446 0.74 0.446814
Target:  5'- cGUCGACGU-GCCGcgcGCGAgCGGCGUCu -3'
miRNA:   3'- -CAGCUGCAgCGGC---UGCUaGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 51672 0.68 0.762338
Target:  5'- -cCGACuacaagcaGCCGGCGAUCGACAc-- -3'
miRNA:   3'- caGCUGcag-----CGGCUGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 51523 0.73 0.476361
Target:  5'- cUCGGC-UCGCCGgccGCGAUCGACAg-- -3'
miRNA:   3'- cAGCUGcAGCGGC---UGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 51213 0.68 0.762338
Target:  5'- -gCGACGccUCGCCGGCGGcagcagcagcUCGACGa-- -3'
miRNA:   3'- caGCUGC--AGCGGCUGCU----------AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 51122 0.66 0.871083
Target:  5'- cUCGACG-CGCCGGuCGAcaaggcgcUCGACGcCGu -3'
miRNA:   3'- cAGCUGCaGCGGCU-GCU--------AGCUGUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.