miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 50830 0.69 0.731523
Target:  5'- gGUCGuCGaCGCCGAgcCGGUCGGCGa-- -3'
miRNA:   3'- -CAGCuGCaGCGGCU--GCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 49962 0.67 0.820162
Target:  5'- uUCGAgcCGaUCGCCGACGAgacagCGGCGc-- -3'
miRNA:   3'- cAGCU--GC-AGCGGCUGCUa----GCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 49897 0.72 0.506846
Target:  5'- gGUCGAuUGUCGUCGGCGA-CGACGggCAg -3'
miRNA:   3'- -CAGCU-GCAGCGGCUGCUaGCUGUa-GU- -5'
23936 5' -53.6 NC_005262.1 + 47567 0.69 0.689127
Target:  5'- -gCGACGUCGcCCGACGAagcgaagCGGCuggcuuUCAg -3'
miRNA:   3'- caGCUGCAGC-GGCUGCUa------GCUGu-----AGU- -5'
23936 5' -53.6 NC_005262.1 + 46795 0.68 0.741907
Target:  5'- -aCGGCGgcgaGCCGAUGAcCGACGUgCAg -3'
miRNA:   3'- caGCUGCag--CGGCUGCUaGCUGUA-GU- -5'
23936 5' -53.6 NC_005262.1 + 46722 0.66 0.849991
Target:  5'- cGUCGACGggcgcgccuaucggCGCCGuGCGcgCGACGa-- -3'
miRNA:   3'- -CAGCUGCa-------------GCGGC-UGCuaGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 46141 0.68 0.752182
Target:  5'- cUCGGCG-CGCUGGCGggCGAUcUCu -3'
miRNA:   3'- cAGCUGCaGCGGCUGCuaGCUGuAGu -5'
23936 5' -53.6 NC_005262.1 + 45877 0.75 0.39095
Target:  5'- cGUUGGCGUCGgCGcCGAUCGGCGgcUCGc -3'
miRNA:   3'- -CAGCUGCAGCgGCuGCUAGCUGU--AGU- -5'
23936 5' -53.6 NC_005262.1 + 44768 0.66 0.871083
Target:  5'- uUCGACaUCGCCaGCGcgCGGCAg-- -3'
miRNA:   3'- cAGCUGcAGCGGcUGCuaGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 44359 0.66 0.838002
Target:  5'- cGUCGACG-CGCUGAaguUCGACGa-- -3'
miRNA:   3'- -CAGCUGCaGCGGCUgcuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 42922 0.7 0.667565
Target:  5'- cGUCGcguCGUCGuCCGGCGcgCG-CGUCGu -3'
miRNA:   3'- -CAGCu--GCAGC-GGCUGCuaGCuGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 42744 0.71 0.580803
Target:  5'- cUCGGCGcCuacgGCaCGACGAUCGugGUCGc -3'
miRNA:   3'- cAGCUGCaG----CG-GCUGCUAGCugUAGU- -5'
23936 5' -53.6 NC_005262.1 + 41677 0.66 0.878766
Target:  5'- --aGACGaUUGCCGGCcacgugcagcaGGUCGACGUUg -3'
miRNA:   3'- cagCUGC-AGCGGCUG-----------CUAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 41371 0.7 0.667565
Target:  5'- -aCGGgGUUGCCGGCGAgcaggCGGCGcUCGa -3'
miRNA:   3'- caGCUgCAGCGGCUGCUa----GCUGU-AGU- -5'
23936 5' -53.6 NC_005262.1 + 41095 0.66 0.846609
Target:  5'- cGUCaACGcCGCCGGCcacGUCGAgAUCGu -3'
miRNA:   3'- -CAGcUGCaGCGGCUGc--UAGCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 40536 0.66 0.878766
Target:  5'- -gCGACGggacgCaCCGAUGAUCGACG-CGa -3'
miRNA:   3'- caGCUGCa----GcGGCUGCUAGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 40364 0.72 0.559354
Target:  5'- uGUCGAuCGUCGgCGACG-UCGACGg-- -3'
miRNA:   3'- -CAGCU-GCAGCgGCUGCuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 39476 0.69 0.699833
Target:  5'- uGUCGAuCG-CGCCGACcAUCGcgagaaGCAUCAg -3'
miRNA:   3'- -CAGCU-GCaGCGGCUGcUAGC------UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 37872 0.73 0.457532
Target:  5'- aGUCGGCGUCGCgcguggCGACGuaccaugcgcgcugcUCGGCAUCGa -3'
miRNA:   3'- -CAGCUGCAGCG------GCUGCu--------------AGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 36891 0.68 0.762338
Target:  5'- aUCGuCG-CGCgGAUGAUCGACAa-- -3'
miRNA:   3'- cAGCuGCaGCGgCUGCUAGCUGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.