miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 36837 0.67 0.829183
Target:  5'- -gCGACGUauggUGCCGACGAcaCGACggCGg -3'
miRNA:   3'- caGCUGCA----GCGGCUGCUa-GCUGuaGU- -5'
23936 5' -53.6 NC_005262.1 + 36422 0.67 0.810948
Target:  5'- uUCG-CGgaggCGCCGACGA-CGGCcUCGg -3'
miRNA:   3'- cAGCuGCa---GCGGCUGCUaGCUGuAGU- -5'
23936 5' -53.6 NC_005262.1 + 36027 0.69 0.710475
Target:  5'- -aUGACGUUGuaGACGGUCGGCGc-- -3'
miRNA:   3'- caGCUGCAGCggCUGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 34649 0.68 0.762338
Target:  5'- -cCGGCGUCGCuCGACuGGcUCGACGa-- -3'
miRNA:   3'- caGCUGCAGCG-GCUG-CU-AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 33873 0.69 0.678367
Target:  5'- -aCGACGcCGCgcgcgaGACGAUCGuGCGUCGg -3'
miRNA:   3'- caGCUGCaGCGg-----CUGCUAGC-UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 33735 0.67 0.801551
Target:  5'- cGUCGuCGUCGCCGGCa----GCAUCGu -3'
miRNA:   3'- -CAGCuGCAGCGGCUGcuagcUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 33648 0.66 0.838002
Target:  5'- cGUCGGCaucCGCCGGCGcuUCGGCGa-- -3'
miRNA:   3'- -CAGCUGca-GCGGCUGCu-AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 33581 0.67 0.797743
Target:  5'- -gUGAUGUCGCCGuugucgaacugcuCGAUCaGCGUCGa -3'
miRNA:   3'- caGCUGCAGCGGCu------------GCUAGcUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 33338 0.66 0.878766
Target:  5'- cGUCGcugcGCGgcaccgUGCCGcCGAUCGACAa-- -3'
miRNA:   3'- -CAGC----UGCa-----GCGGCuGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 33325 0.66 0.846609
Target:  5'- uUCGGCGcCGUCGAUG-UUGGCGUUc -3'
miRNA:   3'- cAGCUGCaGCGGCUGCuAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 32914 0.68 0.741907
Target:  5'- -gCGGCGUcaccauccggcCGCCGGCGAcuccUCGGcCGUCAu -3'
miRNA:   3'- caGCUGCA-----------GCGGCUGCU----AGCU-GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 32815 0.71 0.580803
Target:  5'- uUCGACGUCGgccucauguCCGGCGAcgUCGGCGaCAa -3'
miRNA:   3'- cAGCUGCAGC---------GGCUGCU--AGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 32313 0.66 0.871083
Target:  5'- --gGACGUCGaCGGCGAggUCGGCGg-- -3'
miRNA:   3'- cagCUGCAGCgGCUGCU--AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 31579 0.75 0.364779
Target:  5'- cUCGAaucCGaCGCCGGCGAUCG-CAUCAc -3'
miRNA:   3'- cAGCU---GCaGCGGCUGCUAGCuGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30974 0.77 0.29376
Target:  5'- -cCGACGUCGCCGGacaUGAggcCGACGUCGa -3'
miRNA:   3'- caGCUGCAGCGGCU---GCUa--GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30900 0.66 0.863157
Target:  5'- -gCGACGcCGCCGGCuuGGcCGACGUUc -3'
miRNA:   3'- caGCUGCaGCGGCUG--CUaGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 30852 0.67 0.820162
Target:  5'- cGUCGACGUCGggaUGACGGcCGAggaGUCGc -3'
miRNA:   3'- -CAGCUGCAGCg--GCUGCUaGCUg--UAGU- -5'
23936 5' -53.6 NC_005262.1 + 30749 0.66 0.846609
Target:  5'- --aGAUGUCgGCCGcCGAUCGugAUg- -3'
miRNA:   3'- cagCUGCAG-CGGCuGCUAGCugUAgu -5'
23936 5' -53.6 NC_005262.1 + 30622 0.69 0.689127
Target:  5'- aUCGAgcCGcCGCCGACGcUCGGCAa-- -3'
miRNA:   3'- cAGCU--GCaGCGGCUGCuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 30559 0.71 0.570054
Target:  5'- cUCGACGUgcgCGUCGAUG-UUGACGUCGg -3'
miRNA:   3'- cAGCUGCA---GCGGCUGCuAGCUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.