Results 61 - 80 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 5' | -53.6 | NC_005262.1 | + | 30481 | 0.66 | 0.878766 |
Target: 5'- aUCGACGgCGCCGAa-AUCcuGCGUCAg -3' miRNA: 3'- cAGCUGCaGCGGCUgcUAGc-UGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 30426 | 0.67 | 0.810948 |
Target: 5'- cGUCGACGaUCacgGCCGGCGGguugucgaUCGGCggCAc -3' miRNA: 3'- -CAGCUGC-AG---CGGCUGCU--------AGCUGuaGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 30022 | 0.66 | 0.863157 |
Target: 5'- -aUGAgGUCGguagCGGCGAUCGGCAUg- -3' miRNA: 3'- caGCUgCAGCg---GCUGCUAGCUGUAgu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 29770 | 0.66 | 0.878766 |
Target: 5'- aUCGACGcggCGCaCGAUGcggccCGGCGUCAc -3' miRNA: 3'- cAGCUGCa--GCG-GCUGCua---GCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 29182 | 0.69 | 0.710475 |
Target: 5'- -gCGGcCGUCGCCGAgcUGAUgGAgGUCAu -3' miRNA: 3'- caGCU-GCAGCGGCU--GCUAgCUgUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 29146 | 0.66 | 0.863157 |
Target: 5'- aUCGACGagGCCGagugGCGcgCGACcaugcGUCAg -3' miRNA: 3'- cAGCUGCagCGGC----UGCuaGCUG-----UAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 28234 | 0.69 | 0.731523 |
Target: 5'- uUCG-CGcucuuucccgCGCCGGCGAgCGACAUCGc -3' miRNA: 3'- cAGCuGCa---------GCGGCUGCUaGCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 26698 | 0.67 | 0.801551 |
Target: 5'- -cCGugGcCGgcCCGAuCGGUCGACAUCc -3' miRNA: 3'- caGCugCaGC--GGCU-GCUAGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 24778 | 0.66 | 0.871083 |
Target: 5'- -gCGGCGa-GCCgGGCGAgcacuUCGACAUCGc -3' miRNA: 3'- caGCUGCagCGG-CUGCU-----AGCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 24323 | 0.66 | 0.878766 |
Target: 5'- -gCGAUgGUCGgCG-CGAUCGACAUg- -3' miRNA: 3'- caGCUG-CAGCgGCuGCUAGCUGUAgu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 23433 | 1.09 | 0.002091 |
Target: 5'- cGUCGACGUCGCCGACGAUCGACAUCAg -3' miRNA: 3'- -CAGCUGCAGCGGCUGCUAGCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 22701 | 0.73 | 0.456551 |
Target: 5'- cUCGACGUgGCCGGCGGcgUUGACGa-- -3' miRNA: 3'- cAGCUGCAgCGGCUGCU--AGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 21618 | 0.7 | 0.645873 |
Target: 5'- -gCGcCGUCGCCcaucacguacaGACGAUCGGCcgCGa -3' miRNA: 3'- caGCuGCAGCGG-----------CUGCUAGCUGuaGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 21537 | 0.67 | 0.829183 |
Target: 5'- -cCGcuCGUCGCCGcagugagcgcgGCGcUCGGCAUCGg -3' miRNA: 3'- caGCu-GCAGCGGC-----------UGCuAGCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 20363 | 0.67 | 0.829183 |
Target: 5'- -gCG-CGUCGCCGuCGAUCggauaGACGUUg -3' miRNA: 3'- caGCuGCAGCGGCuGCUAG-----CUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 20092 | 0.66 | 0.878766 |
Target: 5'- uGUCGgugagcGCGUCGCCGcGCGAauUCGGCc--- -3' miRNA: 3'- -CAGC------UGCAGCGGC-UGCU--AGCUGuagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 19582 | 0.72 | 0.563627 |
Target: 5'- aGUCGGCcgagaugauguauucGUCGCCuucggugcgaguGGCGGUCGGCGUCc -3' miRNA: 3'- -CAGCUG---------------CAGCGG------------CUGCUAGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 18043 | 0.66 | 0.871083 |
Target: 5'- aUCGGCGUCGCguucGCGGgaaCGAUGUCGg -3' miRNA: 3'- cAGCUGCAGCGgc--UGCUa--GCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 17320 | 0.66 | 0.871083 |
Target: 5'- uGUCGACGggcugCGUCGugGccggcgCGGCAUUc -3' miRNA: 3'- -CAGCUGCa----GCGGCugCua----GCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 17219 | 0.68 | 0.782249 |
Target: 5'- --gGACGgCGCUGGCG-UCGugGUCGu -3' miRNA: 3'- cagCUGCaGCGGCUGCuAGCugUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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