miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 56172 0.68 0.741907
Target:  5'- aUCGACGccgugaUCGCCGACuaccaugCGGCAUCc -3'
miRNA:   3'- cAGCUGC------AGCGGCUGcua----GCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 46795 0.68 0.741907
Target:  5'- -aCGGCGgcgaGCCGAUGAcCGACGUgCAg -3'
miRNA:   3'- caGCUGCag--CGGCUGCUaGCUGUA-GU- -5'
23936 5' -53.6 NC_005262.1 + 40364 0.72 0.559354
Target:  5'- uGUCGAuCGUCGgCGACG-UCGACGg-- -3'
miRNA:   3'- -CAGCU-GCAGCgGCUGCuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 7364 0.72 0.559354
Target:  5'- --aGGCGUCGCCacGACGGUCGGgcCGUCc -3'
miRNA:   3'- cagCUGCAGCGG--CUGCUAGCU--GUAGu -5'
23936 5' -53.6 NC_005262.1 + 15970 0.72 0.517193
Target:  5'- gGUCGACc-UGCUGGCGAUCGACGagaUCGg -3'
miRNA:   3'- -CAGCUGcaGCGGCUGCUAGCUGU---AGU- -5'
23936 5' -53.6 NC_005262.1 + 49897 0.72 0.506846
Target:  5'- gGUCGAuUGUCGUCGGCGA-CGACGggCAg -3'
miRNA:   3'- -CAGCU-GCAGCGGCUGCUaGCUGUa-GU- -5'
23936 5' -53.6 NC_005262.1 + 12956 0.74 0.446814
Target:  5'- -gCGACGgcaUCGCCGAcCGcUCGGCGUCGa -3'
miRNA:   3'- caGCUGC---AGCGGCU-GCuAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 6555 0.74 0.437193
Target:  5'- uUCGGCGUguugcCGCCGACGAgCGGCGcgaUCAg -3'
miRNA:   3'- cAGCUGCA-----GCGGCUGCUaGCUGU---AGU- -5'
23936 5' -53.6 NC_005262.1 + 54558 0.74 0.424866
Target:  5'- -gCGACGUCGCCGcguucgcgagcgagGCGcugaacgagaagAUCGACGUCAg -3'
miRNA:   3'- caGCUGCAGCGGC--------------UGC------------UAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 62823 0.75 0.382091
Target:  5'- -gCGACGU-GCCGACGAUCGGCc--- -3'
miRNA:   3'- caGCUGCAgCGGCUGCUAGCUGuagu -5'
23936 5' -53.6 NC_005262.1 + 19582 0.72 0.563627
Target:  5'- aGUCGGCcgagaugauguauucGUCGCCuucggugcgaguGGCGGUCGGCGUCc -3'
miRNA:   3'- -CAGCUG---------------CAGCGG------------CUGCUAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 32815 0.71 0.580803
Target:  5'- uUCGACGUCGgccucauguCCGGCGAcgUCGGCGaCAa -3'
miRNA:   3'- cAGCUGCAGC---------GGCUGCU--AGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 55925 0.69 0.721042
Target:  5'- cGUCGAC--CGuCCGGCGAUCGAgggcggcggcCGUCAg -3'
miRNA:   3'- -CAGCUGcaGC-GGCUGCUAGCU----------GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 29182 0.69 0.710475
Target:  5'- -gCGGcCGUCGCCGAgcUGAUgGAgGUCAu -3'
miRNA:   3'- caGCU-GCAGCGGCU--GCUAgCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30622 0.69 0.689127
Target:  5'- aUCGAgcCGcCGCCGACGcUCGGCAa-- -3'
miRNA:   3'- cAGCU--GCaGCGGCUGCuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 47567 0.69 0.689127
Target:  5'- -gCGACGUCGcCCGACGAagcgaagCGGCuggcuuUCAg -3'
miRNA:   3'- caGCUGCAGC-GGCUGCUa------GCUGu-----AGU- -5'
23936 5' -53.6 NC_005262.1 + 33873 0.69 0.678367
Target:  5'- -aCGACGcCGCgcgcgaGACGAUCGuGCGUCGg -3'
miRNA:   3'- caGCUGCaGCGg-----CUGCUAGC-UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 7642 0.69 0.678367
Target:  5'- uGUCGACGcCGgCGGCGA-CGGCuAUCu -3'
miRNA:   3'- -CAGCUGCaGCgGCUGCUaGCUG-UAGu -5'
23936 5' -53.6 NC_005262.1 + 42922 0.7 0.667565
Target:  5'- cGUCGcguCGUCGuCCGGCGcgCG-CGUCGu -3'
miRNA:   3'- -CAGCu--GCAGC-GGCUGCuaGCuGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 42744 0.71 0.580803
Target:  5'- cUCGGCGcCuacgGCaCGACGAUCGugGUCGc -3'
miRNA:   3'- cAGCUGCaG----CG-GCUGCUAGCugUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.