miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 55925 0.69 0.721042
Target:  5'- cGUCGAC--CGuCCGGCGAUCGAgggcggcggcCGUCAg -3'
miRNA:   3'- -CAGCUGcaGC-GGCUGCUAGCU----------GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 29182 0.69 0.710475
Target:  5'- -gCGGcCGUCGCCGAgcUGAUgGAgGUCAu -3'
miRNA:   3'- caGCU-GCAGCGGCU--GCUAgCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30622 0.69 0.689127
Target:  5'- aUCGAgcCGcCGCCGACGcUCGGCAa-- -3'
miRNA:   3'- cAGCU--GCaGCGGCUGCuAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 47567 0.69 0.689127
Target:  5'- -gCGACGUCGcCCGACGAagcgaagCGGCuggcuuUCAg -3'
miRNA:   3'- caGCUGCAGC-GGCUGCUa------GCUGu-----AGU- -5'
23936 5' -53.6 NC_005262.1 + 33873 0.69 0.678367
Target:  5'- -aCGACGcCGCgcgcgaGACGAUCGuGCGUCGg -3'
miRNA:   3'- caGCUGCaGCGg-----CUGCUAGC-UGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 7642 0.69 0.678367
Target:  5'- uGUCGACGcCGgCGGCGA-CGGCuAUCu -3'
miRNA:   3'- -CAGCUGCaGCgGCUGCUaGCUG-UAGu -5'
23936 5' -53.6 NC_005262.1 + 42922 0.7 0.667565
Target:  5'- cGUCGcguCGUCGuCCGGCGcgCG-CGUCGu -3'
miRNA:   3'- -CAGCu--GCAGC-GGCUGCuaGCuGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30022 0.66 0.863157
Target:  5'- -aUGAgGUCGguagCGGCGAUCGGCAUg- -3'
miRNA:   3'- caGCUgCAGCg---GCUGCUAGCUGUAgu -5'
23936 5' -53.6 NC_005262.1 + 30900 0.66 0.863157
Target:  5'- -gCGACGcCGCCGGCuuGGcCGACGUUc -3'
miRNA:   3'- caGCUGCaGCGGCUG--CUaGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 13899 0.66 0.863157
Target:  5'- -cCGuCGUCGCCGACGAcaaUCuGACcgUu -3'
miRNA:   3'- caGCuGCAGCGGCUGCU---AG-CUGuaGu -5'
23936 5' -53.6 NC_005262.1 + 17126 0.66 0.862352
Target:  5'- aUCGGCGggcgucggUGCCGGCGccaugcugccgcuGUCGGcCAUCAg -3'
miRNA:   3'- cAGCUGCa-------GCGGCUGC-------------UAGCU-GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 6140 0.66 0.854997
Target:  5'- aGUCGAuCGU-GCCGcCGAUCGA-GUCGu -3'
miRNA:   3'- -CAGCU-GCAgCGGCuGCUAGCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 17320 0.66 0.871083
Target:  5'- uGUCGACGggcugCGUCGugGccggcgCGGCAUUc -3'
miRNA:   3'- -CAGCUGCa----GCGGCugCua----GCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 32313 0.66 0.871083
Target:  5'- --gGACGUCGaCGGCGAggUCGGCGg-- -3'
miRNA:   3'- cagCUGCAGCgGCUGCU--AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 18043 0.66 0.871083
Target:  5'- aUCGGCGUCGCguucGCGGgaaCGAUGUCGg -3'
miRNA:   3'- cAGCUGCAGCGgc--UGCUa--GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 20092 0.66 0.878766
Target:  5'- uGUCGgugagcGCGUCGCCGcGCGAauUCGGCc--- -3'
miRNA:   3'- -CAGC------UGCAGCGGC-UGCU--AGCUGuagu -5'
23936 5' -53.6 NC_005262.1 + 40536 0.66 0.878766
Target:  5'- -gCGACGggacgCaCCGAUGAUCGACG-CGa -3'
miRNA:   3'- caGCUGCa----GcGGCUGCUAGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 41677 0.66 0.878766
Target:  5'- --aGACGaUUGCCGGCcacgugcagcaGGUCGACGUUg -3'
miRNA:   3'- cagCUGC-AGCGGCUG-----------CUAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 9342 0.66 0.878766
Target:  5'- cUCGACGUugCGCUGAuacuucCGGUCGGCGc-- -3'
miRNA:   3'- cAGCUGCA--GCGGCU------GCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 23433 1.09 0.002091
Target:  5'- cGUCGACGUCGCCGACGAUCGACAUCAg -3'
miRNA:   3'- -CAGCUGCAGCGGCUGCUAGCUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.