Results 61 - 80 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23936 | 5' | -53.6 | NC_005262.1 | + | 17219 | 0.68 | 0.782249 |
Target: 5'- --gGACGgCGCUGGCG-UCGugGUCGu -3' miRNA: 3'- cagCUGCaGCGGCUGCuAGCugUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 36891 | 0.68 | 0.762338 |
Target: 5'- aUCGuCG-CGCgGAUGAUCGACAa-- -3' miRNA: 3'- cAGCuGCaGCGgCUGCUAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 51213 | 0.68 | 0.762338 |
Target: 5'- -gCGACGccUCGCCGGCGGcagcagcagcUCGACGa-- -3' miRNA: 3'- caGCUGC--AGCGGCUGCU----------AGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 8030 | 0.66 | 0.838002 |
Target: 5'- -aCGAUGUCGCCGuACuGGUUGGCccacgcGUCGa -3' miRNA: 3'- caGCUGCAGCGGC-UG-CUAGCUG------UAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 33325 | 0.66 | 0.846609 |
Target: 5'- uUCGGCGcCGUCGAUG-UUGGCGUUc -3' miRNA: 3'- cAGCUGCaGCGGCUGCuAGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 9342 | 0.66 | 0.878766 |
Target: 5'- cUCGACGUugCGCUGAuacuucCGGUCGGCGc-- -3' miRNA: 3'- cAGCUGCA--GCGGCU------GCUAGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 41677 | 0.66 | 0.878766 |
Target: 5'- --aGACGaUUGCCGGCcacgugcagcaGGUCGACGUUg -3' miRNA: 3'- cagCUGC-AGCGGCUG-----------CUAGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 40536 | 0.66 | 0.878766 |
Target: 5'- -gCGACGggacgCaCCGAUGAUCGACG-CGa -3' miRNA: 3'- caGCUGCa----GcGGCUGCUAGCUGUaGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 20092 | 0.66 | 0.878766 |
Target: 5'- uGUCGgugagcGCGUCGCCGcGCGAauUCGGCc--- -3' miRNA: 3'- -CAGC------UGCAGCGGC-UGCU--AGCUGuagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 18043 | 0.66 | 0.871083 |
Target: 5'- aUCGGCGUCGCguucGCGGgaaCGAUGUCGg -3' miRNA: 3'- cAGCUGCAGCGgc--UGCUa--GCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 32313 | 0.66 | 0.871083 |
Target: 5'- --gGACGUCGaCGGCGAggUCGGCGg-- -3' miRNA: 3'- cagCUGCAGCgGCUGCU--AGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 17320 | 0.66 | 0.871083 |
Target: 5'- uGUCGACGggcugCGUCGugGccggcgCGGCAUUc -3' miRNA: 3'- -CAGCUGCa----GCGGCugCua----GCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 30022 | 0.66 | 0.863157 |
Target: 5'- -aUGAgGUCGguagCGGCGAUCGGCAUg- -3' miRNA: 3'- caGCUgCAGCg---GCUGCUAGCUGUAgu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 30900 | 0.66 | 0.863157 |
Target: 5'- -gCGACGcCGCCGGCuuGGcCGACGUUc -3' miRNA: 3'- caGCUGCaGCGGCUG--CUaGCUGUAGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 13899 | 0.66 | 0.863157 |
Target: 5'- -cCGuCGUCGCCGACGAcaaUCuGACcgUu -3' miRNA: 3'- caGCuGCAGCGGCUGCU---AG-CUGuaGu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 17126 | 0.66 | 0.862352 |
Target: 5'- aUCGGCGggcgucggUGCCGGCGccaugcugccgcuGUCGGcCAUCAg -3' miRNA: 3'- cAGCUGCa-------GCGGCUGC-------------UAGCU-GUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 6140 | 0.66 | 0.854997 |
Target: 5'- aGUCGAuCGU-GCCGcCGAUCGA-GUCGu -3' miRNA: 3'- -CAGCU-GCAgCGGCuGCUAGCUgUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 46722 | 0.66 | 0.849991 |
Target: 5'- cGUCGACGggcgcgccuaucggCGCCGuGCGcgCGACGa-- -3' miRNA: 3'- -CAGCUGCa-------------GCGGC-UGCuaGCUGUagu -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 9016 | 0.66 | 0.849991 |
Target: 5'- -gCGACGUCGuuGGCcuucucggucgccUCGGCGUCGa -3' miRNA: 3'- caGCUGCAGCggCUGcu-----------AGCUGUAGU- -5' |
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23936 | 5' | -53.6 | NC_005262.1 | + | 58903 | 0.66 | 0.846609 |
Target: 5'- -cCGACGUcaCGCCGAagcaGGUCGA-GUCGg -3' miRNA: 3'- caGCUGCA--GCGGCUg---CUAGCUgUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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