miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 58566 0.67 0.820162
Target:  5'- -gCGGCGUCGacgccaCGGCGAUCGuGCAg-- -3'
miRNA:   3'- caGCUGCAGCg-----GCUGCUAGC-UGUagu -5'
23936 5' -53.6 NC_005262.1 + 33648 0.66 0.838002
Target:  5'- cGUCGGCaucCGCCGGCGcuUCGGCGa-- -3'
miRNA:   3'- -CAGCUGca-GCGGCUGCu-AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 13899 0.66 0.863157
Target:  5'- -cCGuCGUCGCCGACGAcaaUCuGACcgUu -3'
miRNA:   3'- caGCuGCAGCGGCUGCU---AG-CUGuaGu -5'
23936 5' -53.6 NC_005262.1 + 40536 0.66 0.878766
Target:  5'- -gCGACGggacgCaCCGAUGAUCGACG-CGa -3'
miRNA:   3'- caGCUGCa----GcGGCUGCUAGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 14195 0.68 0.762338
Target:  5'- -gCGACGUCGCgGcCGAgCGACA-CAu -3'
miRNA:   3'- caGCUGCAGCGgCuGCUaGCUGUaGU- -5'
23936 5' -53.6 NC_005262.1 + 33735 0.67 0.801551
Target:  5'- cGUCGuCGUCGCCGGCa----GCAUCGu -3'
miRNA:   3'- -CAGCuGCAGCGGCUGcuagcUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 8030 0.66 0.838002
Target:  5'- -aCGAUGUCGCCGuACuGGUUGGCccacgcGUCGa -3'
miRNA:   3'- caGCUGCAGCGGC-UG-CUAGCUG------UAGU- -5'
23936 5' -53.6 NC_005262.1 + 41677 0.66 0.878766
Target:  5'- --aGACGaUUGCCGGCcacgugcagcaGGUCGACGUUg -3'
miRNA:   3'- cagCUGC-AGCGGCUG-----------CUAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 30426 0.67 0.810948
Target:  5'- cGUCGACGaUCacgGCCGGCGGguugucgaUCGGCggCAc -3'
miRNA:   3'- -CAGCUGC-AG---CGGCUGCU--------AGCUGuaGU- -5'
23936 5' -53.6 NC_005262.1 + 9342 0.66 0.878766
Target:  5'- cUCGACGUugCGCUGAuacuucCGGUCGGCGc-- -3'
miRNA:   3'- cAGCUGCA--GCGGCU------GCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 52874 0.66 0.838002
Target:  5'- cUCGAUGUCGaCGACGAggCGAaCGUUc -3'
miRNA:   3'- cAGCUGCAGCgGCUGCUa-GCU-GUAGu -5'
23936 5' -53.6 NC_005262.1 + 52626 0.67 0.820162
Target:  5'- -gCGGCGUCGUCGGCGuuGUCG-CAg-- -3'
miRNA:   3'- caGCUGCAGCGGCUGC--UAGCuGUagu -5'
23936 5' -53.6 NC_005262.1 + 9016 0.66 0.849991
Target:  5'- -gCGACGUCGuuGGCcuucucggucgccUCGGCGUCGa -3'
miRNA:   3'- caGCUGCAGCggCUGcu-----------AGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 17126 0.66 0.862352
Target:  5'- aUCGGCGggcgucggUGCCGGCGccaugcugccgcuGUCGGcCAUCAg -3'
miRNA:   3'- cAGCUGCa-------GCGGCUGC-------------UAGCU-GUAGU- -5'
23936 5' -53.6 NC_005262.1 + 17320 0.66 0.871083
Target:  5'- uGUCGACGggcugCGUCGugGccggcgCGGCAUUc -3'
miRNA:   3'- -CAGCUGCa----GCGGCugCua----GCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 20092 0.66 0.878766
Target:  5'- uGUCGgugagcGCGUCGCCGcGCGAauUCGGCc--- -3'
miRNA:   3'- -CAGC------UGCAGCGGC-UGCU--AGCUGuagu -5'
23936 5' -53.6 NC_005262.1 + 57476 0.69 0.731523
Target:  5'- -gCGGCGggCGCCGACGAgaggCGGCcggCGa -3'
miRNA:   3'- caGCUGCa-GCGGCUGCUa---GCUGua-GU- -5'
23936 5' -53.6 NC_005262.1 + 10689 0.68 0.762338
Target:  5'- uUCGugaaGUCGCCGACGAU-GAUGUUg -3'
miRNA:   3'- cAGCug--CAGCGGCUGCUAgCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 17219 0.68 0.782249
Target:  5'- --gGACGgCGCUGGCG-UCGugGUCGu -3'
miRNA:   3'- cagCUGCaGCGGCUGCuAGCugUAGU- -5'
23936 5' -53.6 NC_005262.1 + 13814 0.67 0.801551
Target:  5'- aUCGGCGggagcgggCGCCGcugucucgucgGCGAUCGGC-UCGa -3'
miRNA:   3'- cAGCUGCa-------GCGGC-----------UGCUAGCUGuAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.