miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23936 5' -53.6 NC_005262.1 + 21618 0.7 0.645873
Target:  5'- -gCGcCGUCGCCcaucacguacaGACGAUCGGCcgCGa -3'
miRNA:   3'- caGCuGCAGCGG-----------CUGCUAGCUGuaGU- -5'
23936 5' -53.6 NC_005262.1 + 17219 0.68 0.782249
Target:  5'- --gGACGgCGCUGGCG-UCGugGUCGu -3'
miRNA:   3'- cagCUGCaGCGGCUGCuAGCugUAGU- -5'
23936 5' -53.6 NC_005262.1 + 33325 0.66 0.846609
Target:  5'- uUCGGCGcCGUCGAUG-UUGGCGUUc -3'
miRNA:   3'- cAGCUGCaGCGGCUGCuAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 906 0.7 0.667565
Target:  5'- cGUCGGCG-CGCUGGCGggUGAUgguGUCGc -3'
miRNA:   3'- -CAGCUGCaGCGGCUGCuaGCUG---UAGU- -5'
23936 5' -53.6 NC_005262.1 + 58903 0.66 0.846609
Target:  5'- -cCGACGUcaCGCCGAagcaGGUCGA-GUCGg -3'
miRNA:   3'- caGCUGCA--GCGGCUg---CUAGCUgUAGU- -5'
23936 5' -53.6 NC_005262.1 + 30974 0.77 0.29376
Target:  5'- -cCGACGUCGCCGGacaUGAggcCGACGUCGa -3'
miRNA:   3'- caGCUGCAGCGGCU---GCUa--GCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 52874 0.66 0.838002
Target:  5'- cUCGAUGUCGaCGACGAggCGAaCGUUc -3'
miRNA:   3'- cAGCUGCAGCgGCUGCUa-GCU-GUAGu -5'
23936 5' -53.6 NC_005262.1 + 11755 0.75 0.382091
Target:  5'- cUCGAUGUaggCGCCGGCGAUCGuCAUg- -3'
miRNA:   3'- cAGCUGCA---GCGGCUGCUAGCuGUAgu -5'
23936 5' -53.6 NC_005262.1 + 45877 0.75 0.39095
Target:  5'- cGUUGGCGUCGgCGcCGAUCGGCGgcUCGc -3'
miRNA:   3'- -CAGCUGCAGCgGCuGCUAGCUGU--AGU- -5'
23936 5' -53.6 NC_005262.1 + 22701 0.73 0.456551
Target:  5'- cUCGACGUgGCCGGCGGcgUUGACGa-- -3'
miRNA:   3'- cAGCUGCAgCGGCUGCU--AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 37872 0.73 0.457532
Target:  5'- aGUCGGCGUCGCgcguggCGACGuaccaugcgcgcugcUCGGCAUCGa -3'
miRNA:   3'- -CAGCUGCAGCG------GCUGCu--------------AGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 13419 0.72 0.527624
Target:  5'- uUCG-CGUCGCC-ACGGUCGACGa-- -3'
miRNA:   3'- cAGCuGCAGCGGcUGCUAGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 30559 0.71 0.570054
Target:  5'- cUCGACGUgcgCGUCGAUG-UUGACGUCGg -3'
miRNA:   3'- cAGCUGCA---GCGGCUGCuAGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 56158 0.69 0.689127
Target:  5'- -cCGuCGcCGCCGGCG-UCGACAUUc -3'
miRNA:   3'- caGCuGCaGCGGCUGCuAGCUGUAGu -5'
23936 5' -53.6 NC_005262.1 + 28234 0.69 0.731523
Target:  5'- uUCG-CGcucuuucccgCGCCGGCGAgCGACAUCGc -3'
miRNA:   3'- cAGCuGCa---------GCGGCUGCUaGCUGUAGU- -5'
23936 5' -53.6 NC_005262.1 + 46141 0.68 0.752182
Target:  5'- cUCGGCG-CGCUGGCGggCGAUcUCu -3'
miRNA:   3'- cAGCUGCaGCGGCUGCuaGCUGuAGu -5'
23936 5' -53.6 NC_005262.1 + 51213 0.68 0.762338
Target:  5'- -gCGACGccUCGCCGGCGGcagcagcagcUCGACGa-- -3'
miRNA:   3'- caGCUGC--AGCGGCUGCU----------AGCUGUagu -5'
23936 5' -53.6 NC_005262.1 + 13814 0.67 0.801551
Target:  5'- aUCGGCGggagcgggCGCCGcugucucgucgGCGAUCGGC-UCGa -3'
miRNA:   3'- cAGCUGCa-------GCGGC-----------UGCUAGCUGuAGU- -5'
23936 5' -53.6 NC_005262.1 + 36422 0.67 0.810948
Target:  5'- uUCG-CGgaggCGCCGACGA-CGGCcUCGg -3'
miRNA:   3'- cAGCuGCa---GCGGCUGCUaGCUGuAGU- -5'
23936 5' -53.6 NC_005262.1 + 20363 0.67 0.829183
Target:  5'- -gCG-CGUCGCCGuCGAUCggauaGACGUUg -3'
miRNA:   3'- caGCuGCAGCGGCuGCUAG-----CUGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.