miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23937 3' -53.9 NC_005262.1 + 14126 0.66 0.82249
Target:  5'- aCCGguacuuuUUGAgugGGAugGCGugcgccgggauuguCCGCCGCg -3'
miRNA:   3'- -GGC-------AACUaaaCCUugCGC--------------GGCGGCGg -5'
23937 3' -53.9 NC_005262.1 + 59672 0.67 0.817029
Target:  5'- cCCGgaucgUGAauugUGGAcgaucgGCGUGCCGCCacGCg -3'
miRNA:   3'- -GGCa----ACUaa--ACCU------UGCGCGGCGG--CGg -5'
23937 3' -53.9 NC_005262.1 + 44167 0.67 0.807778
Target:  5'- uCC-UUGAUUUGccGGGCuggaCGCCGaCCGCCa -3'
miRNA:   3'- -GGcAACUAAAC--CUUGc---GCGGC-GGCGG- -5'
23937 3' -53.9 NC_005262.1 + 33851 0.67 0.807778
Target:  5'- cCCGagcUGAUcgagUGGAucaACGaCGCCGCgCGCg -3'
miRNA:   3'- -GGCa--ACUAa---ACCU---UGC-GCGGCG-GCGg -5'
23937 3' -53.9 NC_005262.1 + 23072 0.67 0.807778
Target:  5'- nCCGUgcucGAg--GGcgucaGCGCCGCCGUa -3'
miRNA:   3'- -GGCAa---CUaaaCCuug--CGCGGCGGCGg -5'
23937 3' -53.9 NC_005262.1 + 20386 0.67 0.807778
Target:  5'- aCGUUGAgcgc---CGCGCCguugagcucGCCGCCg -3'
miRNA:   3'- gGCAACUaaaccuuGCGCGG---------CGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 54598 0.67 0.807778
Target:  5'- aCGUUGccuaGGAcggGCugaucuGCGCCGaCCGCCa -3'
miRNA:   3'- gGCAACuaaaCCU---UG------CGCGGC-GGCGG- -5'
23937 3' -53.9 NC_005262.1 + 4020 0.67 0.803085
Target:  5'- gCGUUGAccugcgagcgGGAGacgaacgauccgacCGUuugGCCGCCGCCa -3'
miRNA:   3'- gGCAACUaaa-------CCUU--------------GCG---CGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 14298 0.67 0.798348
Target:  5'- gCGUUGcgUggacgGGAGgGCGgCGgaaCCGCCg -3'
miRNA:   3'- gGCAACuaAa----CCUUgCGCgGC---GGCGG- -5'
23937 3' -53.9 NC_005262.1 + 6539 0.67 0.798348
Target:  5'- cUCGcgGAUcacGGGcuucgGCGUGuuGCCGCCg -3'
miRNA:   3'- -GGCaaCUAaa-CCU-----UGCGCggCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 24553 0.67 0.798348
Target:  5'- gCCGgcgUGAUccUGcuGAuCGCGuCCGUCGCCg -3'
miRNA:   3'- -GGCa--ACUAa-AC--CUuGCGC-GGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 38875 0.67 0.798348
Target:  5'- gCUGgUGAUcgcgUGGAACuGCGauucaCCGCCGCa -3'
miRNA:   3'- -GGCaACUAa---ACCUUG-CGC-----GGCGGCGg -5'
23937 3' -53.9 NC_005262.1 + 17920 0.67 0.798348
Target:  5'- cCCGcgGAUcacGAGCGUgauGCCGuCCGCCu -3'
miRNA:   3'- -GGCaaCUAaacCUUGCG---CGGC-GGCGG- -5'
23937 3' -53.9 NC_005262.1 + 37383 0.67 0.798348
Target:  5'- ----aGAgcagcgGGAACGCGUCGCgCGUCu -3'
miRNA:   3'- ggcaaCUaaa---CCUUGCGCGGCG-GCGG- -5'
23937 3' -53.9 NC_005262.1 + 6371 0.67 0.794529
Target:  5'- gCGcgGAUUgucagucaggucGAGCGUGCUGCCGUCg -3'
miRNA:   3'- gGCaaCUAAac----------CUUGCGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 30998 0.67 0.78875
Target:  5'- aCGUcGAacgcgaUGGccGGCGCGCCGCCGgUg -3'
miRNA:   3'- gGCAaCUaa----ACC--UUGCGCGGCGGCgG- -5'
23937 3' -53.9 NC_005262.1 + 22717 0.67 0.78875
Target:  5'- gCGUUGAc---GAGCGUGCCGggacaccaaUCGCCa -3'
miRNA:   3'- gGCAACUaaacCUUGCGCGGC---------GGCGG- -5'
23937 3' -53.9 NC_005262.1 + 18001 0.67 0.78875
Target:  5'- ----cGGUccUGGAucaGCaCGCCGCCGCCc -3'
miRNA:   3'- ggcaaCUAa-ACCU---UGcGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 42041 0.67 0.778994
Target:  5'- aCGUUGAc-----GCGUGCCGCUGCg -3'
miRNA:   3'- gGCAACUaaaccuUGCGCGGCGGCGg -5'
23937 3' -53.9 NC_005262.1 + 49336 0.67 0.778994
Target:  5'- aCCGacGAgcaGGcGCGCGCCGCgcuCGCUg -3'
miRNA:   3'- -GGCaaCUaaaCCuUGCGCGGCG---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.