miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23937 5' -55.7 NC_005262.1 + 23081 1.1 0.001021
Target:  5'- gAGGGCGUCAGCGCCGCCGUAUUAUGGc -3'
miRNA:   3'- -UCCCGCAGUCGCGGCGGCAUAAUACC- -5'
23937 5' -55.7 NC_005262.1 + 12103 0.81 0.110433
Target:  5'- cGGGCGcaaUCAGCGCCGCCGUGc----- -3'
miRNA:   3'- uCCCGC---AGUCGCGGCGGCAUaauacc -5'
23937 5' -55.7 NC_005262.1 + 16733 0.75 0.266014
Target:  5'- cGGGCGUCA-CGCCGUCGUcgUAg-- -3'
miRNA:   3'- uCCCGCAGUcGCGGCGGCAuaAUacc -5'
23937 5' -55.7 NC_005262.1 + 29515 0.75 0.266014
Target:  5'- gAGGGCGUCGGUGCCGUCa-------- -3'
miRNA:   3'- -UCCCGCAGUCGCGGCGGcauaauacc -5'
23937 5' -55.7 NC_005262.1 + 14046 0.73 0.364616
Target:  5'- cGGGCGcgGGCGCCGCCGgcgucgGUGcGg -3'
miRNA:   3'- uCCCGCagUCGCGGCGGCauaa--UAC-C- -5'
23937 5' -55.7 NC_005262.1 + 60125 0.72 0.390684
Target:  5'- gAGGGCGcCAGCGUCGCgGcgaaggcAUGGg -3'
miRNA:   3'- -UCCCGCaGUCGCGGCGgCauaa---UACC- -5'
23937 5' -55.7 NC_005262.1 + 17131 0.71 0.427278
Target:  5'- cGGGCGUCGGUGCCGgCGc------- -3'
miRNA:   3'- uCCCGCAGUCGCGGCgGCauaauacc -5'
23937 5' -55.7 NC_005262.1 + 62513 0.71 0.427278
Target:  5'- gGGGGCGUCcugcuGGCGaaaauCGCCGgccuuugggcgGUUGUGGg -3'
miRNA:   3'- -UCCCGCAG-----UCGCg----GCGGCa----------UAAUACC- -5'
23937 5' -55.7 NC_005262.1 + 37097 0.71 0.437692
Target:  5'- aAGGGCGUCacguuccgcaauaucGGCaccuuucgcgaucaGCCGCC-UGUUGUGGc -3'
miRNA:   3'- -UCCCGCAG---------------UCG--------------CGGCGGcAUAAUACC- -5'
23937 5' -55.7 NC_005262.1 + 16353 0.71 0.44632
Target:  5'- cGGcGCGcugaUCGGCGCCGCCGcGUUcgGc -3'
miRNA:   3'- uCC-CGC----AGUCGCGGCGGCaUAAuaCc -5'
23937 5' -55.7 NC_005262.1 + 5365 0.71 0.456017
Target:  5'- cGGGGCGUCcuugacgggcagGGaCGCgGCCGUGUcGUGc -3'
miRNA:   3'- -UCCCGCAG------------UC-GCGgCGGCAUAaUACc -5'
23937 5' -55.7 NC_005262.1 + 59211 0.7 0.493855
Target:  5'- cGGGCGcucacgcccgagCAGCGCCGCCGc----UGGc -3'
miRNA:   3'- uCCCGCa-----------GUCGCGGCGGCauaauACC- -5'
23937 5' -55.7 NC_005262.1 + 35836 0.7 0.495887
Target:  5'- gAGcGGCGUCGGCGCCGCgaccgcccagaUGU-UUGUGc -3'
miRNA:   3'- -UC-CCGCAGUCGCGGCG-----------GCAuAAUACc -5'
23937 5' -55.7 NC_005262.1 + 25854 0.7 0.516406
Target:  5'- cGGGCGUUGGCGUCGCgGUcc-AUGc -3'
miRNA:   3'- uCCCGCAGUCGCGGCGgCAuaaUACc -5'
23937 5' -55.7 NC_005262.1 + 47718 0.69 0.537259
Target:  5'- cGGGCGgCGGCucGCCGCCuGUAUc-UGGu -3'
miRNA:   3'- uCCCGCaGUCG--CGGCGG-CAUAauACC- -5'
23937 5' -55.7 NC_005262.1 + 9228 0.68 0.590507
Target:  5'- aAGuGGCGUCGGcCGCCaGUCGUGag--GGg -3'
miRNA:   3'- -UC-CCGCAGUC-GCGG-CGGCAUaauaCC- -5'
23937 5' -55.7 NC_005262.1 + 35522 0.68 0.590507
Target:  5'- -aGGCGaCAGCGCCGgCCGUGa----- -3'
miRNA:   3'- ucCCGCaGUCGCGGC-GGCAUaauacc -5'
23937 5' -55.7 NC_005262.1 + 59973 0.68 0.622923
Target:  5'- cGGGGCGcUCGGCaccuuccuccggGCCGUCG-AggAUGGc -3'
miRNA:   3'- -UCCCGC-AGUCG------------CGGCGGCaUaaUACC- -5'
23937 5' -55.7 NC_005262.1 + 22339 0.67 0.652165
Target:  5'- uGGGCugcgGUCAgcguaacgguagccGCGCCGCcCGUGUUAgucGGc -3'
miRNA:   3'- uCCCG----CAGU--------------CGCGGCG-GCAUAAUa--CC- -5'
23937 5' -55.7 NC_005262.1 + 61703 0.67 0.675903
Target:  5'- cAGGGCGcgccggguucgcUCGGCGCgcucugcuuacuuCGCCGcGUcGUGGa -3'
miRNA:   3'- -UCCCGC------------AGUCGCG-------------GCGGCaUAaUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.