miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23938 3' -62.3 NC_005262.1 + 16351 0.66 0.350838
Target:  5'- cUCGGC-GCGcugaucGGCGCCGCCGCg---- -3'
miRNA:   3'- uAGUCGuCGC------UCGCGGCGGCGgucuu -5'
23938 3' -62.3 NC_005262.1 + 35244 0.66 0.350838
Target:  5'- gAUCGGCAGCGgcugGGCGCCcCCGgC-GAAc -3'
miRNA:   3'- -UAGUCGUCGC----UCGCGGcGGCgGuCUU- -5'
23938 3' -62.3 NC_005262.1 + 30877 0.66 0.350838
Target:  5'- --aGGCgcuGGCGAGCGUcgcgcgugcgaCGCCGCCGGc- -3'
miRNA:   3'- uagUCG---UCGCUCGCG-----------GCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 32306 0.66 0.342743
Target:  5'- cGUCgaGGCAGCGcguGCGCUguucauggGCCGUCAGGc -3'
miRNA:   3'- -UAG--UCGUCGCu--CGCGG--------CGGCGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 57151 0.66 0.334784
Target:  5'- -aCGGCGacGCGAucgaaGCGCCGCCGCaCAucGAAu -3'
miRNA:   3'- uaGUCGU--CGCU-----CGCGGCGGCG-GU--CUU- -5'
23938 3' -62.3 NC_005262.1 + 28412 0.66 0.334784
Target:  5'- -gCGGUAuUGAGCGCCGCgugCGCCAGc- -3'
miRNA:   3'- uaGUCGUcGCUCGCGGCG---GCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 27555 0.66 0.334784
Target:  5'- cUCAGCcccGGCGAGgaCGCCGCgcagCGCgAGAAg -3'
miRNA:   3'- uAGUCG---UCGCUC--GCGGCG----GCGgUCUU- -5'
23938 3' -62.3 NC_005262.1 + 59217 0.66 0.334784
Target:  5'- cUCAcGCccgAGC-AGCGCCGCCGCUGGc- -3'
miRNA:   3'- uAGU-CG---UCGcUCGCGGCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 27815 0.66 0.326961
Target:  5'- cAUCGGUAGCGAgaaGCGCgGCCGgUCuGAc -3'
miRNA:   3'- -UAGUCGUCGCU---CGCGgCGGC-GGuCUu -5'
23938 3' -62.3 NC_005262.1 + 12563 0.66 0.326187
Target:  5'- -gCGGCGGCgcucgucGAGCugcuGCUGCCGCCGGc- -3'
miRNA:   3'- uaGUCGUCG-------CUCG----CGGCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 43205 0.66 0.319275
Target:  5'- -aCAGCccuGCGGcGCGCCGCgcgcugcuCGCCGGGc -3'
miRNA:   3'- uaGUCGu--CGCU-CGCGGCG--------GCGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 57220 0.66 0.319275
Target:  5'- gGUCGGCGgcaucGCGA-CGCgCGCCGCCAa-- -3'
miRNA:   3'- -UAGUCGU-----CGCUcGCG-GCGGCGGUcuu -5'
23938 3' -62.3 NC_005262.1 + 10491 0.66 0.319275
Target:  5'- -cCAGCAGC-AGCGCCagcaugGCgGCCAGc- -3'
miRNA:   3'- uaGUCGUCGcUCGCGG------CGgCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 63537 0.66 0.318514
Target:  5'- cUCAGCGcguguacguccgcGCGAaauguccCGCCGCCGCCGGc- -3'
miRNA:   3'- uAGUCGU-------------CGCUc------GCGGCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 63088 0.66 0.314728
Target:  5'- -gCGGCGGCGugcaaGGCGCugcugaacuaccuuuCGCCGCCGGc- -3'
miRNA:   3'- uaGUCGUCGC-----UCGCG---------------GCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 57298 0.66 0.311725
Target:  5'- -gCAGCAGaaCGAGCGCCGCauCGagCAGAu -3'
miRNA:   3'- uaGUCGUC--GCUCGCGGCG--GCg-GUCUu -5'
23938 3' -62.3 NC_005262.1 + 11645 0.66 0.310977
Target:  5'- cUCGGCGGCGccGGCGUCgcgcugcacgcugGCCGgCAGAGc -3'
miRNA:   3'- uAGUCGUCGC--UCGCGG-------------CGGCgGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 47444 0.67 0.304311
Target:  5'- -gCGGCGGCGccgaucagcGCGCCGa-GCCAGAGg -3'
miRNA:   3'- uaGUCGUCGCu--------CGCGGCggCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 49418 0.67 0.304311
Target:  5'- gAUCAGCAcauGCG-GCuuaucaCCGCCGCCAGu- -3'
miRNA:   3'- -UAGUCGU---CGCuCGc-----GGCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 2769 0.67 0.297033
Target:  5'- -aCGGCGGCGGGUGCCGCauCCu--- -3'
miRNA:   3'- uaGUCGUCGCUCGCGGCGgcGGucuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.