Results 21 - 40 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 16083 | 0.68 | 0.262671 |
Target: 5'- --aGGCGGCGAGcCGCCGCCcgGCgCGGu- -3' miRNA: 3'- uagUCGUCGCUC-GCGGCGG--CG-GUCuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 17259 | 0.68 | 0.256199 |
Target: 5'- -gCGGCGGCcGGCGCCG-CGCUGGGc -3' miRNA: 3'- uaGUCGUCGcUCGCGGCgGCGGUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 59693 | 0.68 | 0.243647 |
Target: 5'- gAUCGGCGugccgccacGCGGGCGCuaCGUCGCCGGc- -3' miRNA: 3'- -UAGUCGU---------CGCUCGCG--GCGGCGGUCuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 22911 | 0.67 | 0.269275 |
Target: 5'- gGUCGGUucucguguGCG-GUGCCGCUGCCGGc- -3' miRNA: 3'- -UAGUCGu-------CGCuCGCGGCGGCGGUCuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 49228 | 0.67 | 0.269275 |
Target: 5'- ---uGCGcGUGAGCGCCGCgGCgAGAc -3' miRNA: 3'- uaguCGU-CGCUCGCGGCGgCGgUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 29295 | 0.67 | 0.276013 |
Target: 5'- cGUCucGCAGaaguCGcGCGCCGCCGCgCGGAu -3' miRNA: 3'- -UAGu-CGUC----GCuCGCGGCGGCG-GUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 46793 | 0.67 | 0.276013 |
Target: 5'- uUCAGCAcGaCGAGCGCgCGCUcgGCCGGc- -3' miRNA: 3'- uAGUCGU-C-GCUCGCG-GCGG--CGGUCuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 11080 | 0.67 | 0.289891 |
Target: 5'- cGUCAGCAGCGcggccucguccGGCGUCGgCCGgCGGc- -3' miRNA: 3'- -UAGUCGUCGC-----------UCGCGGC-GGCgGUCuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 13676 | 0.67 | 0.282885 |
Target: 5'- cUCGGuCAGCGAGCGCU-CgGCCGGc- -3' miRNA: 3'- uAGUC-GUCGCUCGCGGcGgCGGUCuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 17125 | 0.67 | 0.282885 |
Target: 5'- cAUCGGCgGGCGucGGUGCCGgCGCCAu-- -3' miRNA: 3'- -UAGUCG-UCGC--UCGCGGCgGCGGUcuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 17291 | 0.67 | 0.269275 |
Target: 5'- --gGGCAG-GGGCGUCGCgGUCGGAGu -3' miRNA: 3'- uagUCGUCgCUCGCGGCGgCGGUCUU- -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 24942 | 0.67 | 0.282885 |
Target: 5'- -cCAGCGuugacGCGAGCGCUGCCGUg---- -3' miRNA: 3'- uaGUCGU-----CGCUCGCGGCGGCGgucuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 47444 | 0.67 | 0.304311 |
Target: 5'- -gCGGCGGCGccgaucagcGCGCCGa-GCCAGAGg -3' miRNA: 3'- uaGUCGUCGCu--------CGCGGCggCGGUCUU- -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 49418 | 0.67 | 0.304311 |
Target: 5'- gAUCAGCAcauGCG-GCuuaucaCCGCCGCCAGu- -3' miRNA: 3'- -UAGUCGU---CGCuCGc-----GGCGGCGGUCuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 56546 | 0.67 | 0.269275 |
Target: 5'- cGUCgAGCAGCGcgaggGGCGCaucauCCGCCAGGg -3' miRNA: 3'- -UAG-UCGUCGC-----UCGCGgc---GGCGGUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 2769 | 0.67 | 0.297033 |
Target: 5'- -aCGGCGGCGGGUGCCGCauCCu--- -3' miRNA: 3'- uaGUCGUCGCUCGCGGCGgcGGucuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 62577 | 0.67 | 0.282885 |
Target: 5'- --aGGCGGCGAGCuuUGCCGCCu--- -3' miRNA: 3'- uagUCGUCGCUCGcgGCGGCGGucuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 4577 | 0.67 | 0.282885 |
Target: 5'- -cCAGCGGCG-GCGCUGCUcggGCguGAGc -3' miRNA: 3'- uaGUCGUCGCuCGCGGCGG---CGguCUU- -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 46428 | 0.67 | 0.276013 |
Target: 5'- gGUCcGCAGgGGcccgccGCGCCGCCcgcGCCGGAc -3' miRNA: 3'- -UAGuCGUCgCU------CGCGGCGG---CGGUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 50322 | 0.67 | 0.276013 |
Target: 5'- -cCGGCcGC-AGCGcCCGCCGCgCAGGAc -3' miRNA: 3'- uaGUCGuCGcUCGC-GGCGGCG-GUCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home