miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23938 3' -62.3 NC_005262.1 + 22805 1.04 0.000437
Target:  5'- cAUCAGCAGCGAGCGCCGCCGCCAGAAa -3'
miRNA:   3'- -UAGUCGUCGCUCGCGGCGGCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 42114 0.84 0.016463
Target:  5'- -aCAGCAGCGcGGCGCCGCCGCuCAGGu -3'
miRNA:   3'- uaGUCGUCGC-UCGCGGCGGCG-GUCUu -5'
23938 3' -62.3 NC_005262.1 + 22132 0.76 0.061345
Target:  5'- -cCGGCGGCGAuGaCGgCGCCGCCGGAAa -3'
miRNA:   3'- uaGUCGUCGCU-C-GCgGCGGCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 29645 0.75 0.074675
Target:  5'- cAUCGGCAGCGAGCGgcaUGCCGCCc--- -3'
miRNA:   3'- -UAGUCGUCGCUCGCg--GCGGCGGucuu -5'
23938 3' -62.3 NC_005262.1 + 13478 0.74 0.093309
Target:  5'- ---cGCGGCGGGCGCUGCgGCCGGc- -3'
miRNA:   3'- uaguCGUCGCUCGCGGCGgCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 18239 0.73 0.098616
Target:  5'- -aCAGCAgcGCGAGCGaauccuUGCCGCCGGAAa -3'
miRNA:   3'- uaGUCGU--CGCUCGCg-----GCGGCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 51233 0.73 0.098616
Target:  5'- -gCAGCAGCucgacGAGCGCCGCCGCg---- -3'
miRNA:   3'- uaGUCGUCG-----CUCGCGGCGGCGgucuu -5'
23938 3' -62.3 NC_005262.1 + 13813 0.73 0.101375
Target:  5'- cAUCGGCgggAGCGGGCGCCGCUGUCu--- -3'
miRNA:   3'- -UAGUCG---UCGCUCGCGGCGGCGGucuu -5'
23938 3' -62.3 NC_005262.1 + 21380 0.7 0.17876
Target:  5'- -gCGGcCGGCuGGCGCCGCCugaaaGCCGGAGa -3'
miRNA:   3'- uaGUC-GUCGcUCGCGGCGG-----CGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 41649 0.7 0.183522
Target:  5'- cUCGGCGauGCGGGCaGCCGCggcgGCCAGAc -3'
miRNA:   3'- uAGUCGU--CGCUCG-CGGCGg---CGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 45109 0.7 0.188395
Target:  5'- cUCAacuCGGCGGGUGCCGCgaacaccgcgCGCCAGAAc -3'
miRNA:   3'- uAGUc--GUCGCUCGCGGCG----------GCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 39509 0.69 0.193382
Target:  5'- --gGGCGGCGAGCGUCG-CGCCGa-- -3'
miRNA:   3'- uagUCGUCGCUCGCGGCgGCGGUcuu -5'
23938 3' -62.3 NC_005262.1 + 14027 0.69 0.203704
Target:  5'- -gCGGCAGCGgccggagccucgGGCGCgggCGCCGCCGGc- -3'
miRNA:   3'- uaGUCGUCGC------------UCGCG---GCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 36560 0.69 0.220079
Target:  5'- ---uGCAGCGAaa-CCGCCGCCAGAu -3'
miRNA:   3'- uaguCGUCGCUcgcGGCGGCGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 58769 0.69 0.220079
Target:  5'- -cCGGcCGGCGAGCaaCUGCCGCUGGAGg -3'
miRNA:   3'- uaGUC-GUCGCUCGc-GGCGGCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 57474 0.69 0.225782
Target:  5'- --aAGCGGCGGGCGCCgacgagagGCgGCCGGc- -3'
miRNA:   3'- uagUCGUCGCUCGCGG--------CGgCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 35836 0.69 0.225782
Target:  5'- --gAGCGGCGucGGCGCCGCgacCGcCCAGAu -3'
miRNA:   3'- uagUCGUCGC--UCGCGGCG---GC-GGUCUu -5'
23938 3' -62.3 NC_005262.1 + 46535 0.68 0.243647
Target:  5'- -gCAGCccAGCGcGGCGCCgGCCGCCGc-- -3'
miRNA:   3'- uaGUCG--UCGC-UCGCGG-CGGCGGUcuu -5'
23938 3' -62.3 NC_005262.1 + 707 0.68 0.243647
Target:  5'- uUCAGCAGCGccuuGCacGCCGCCGCa---- -3'
miRNA:   3'- uAGUCGUCGCu---CG--CGGCGGCGgucuu -5'
23938 3' -62.3 NC_005262.1 + 59693 0.68 0.243647
Target:  5'- gAUCGGCGugccgccacGCGGGCGCuaCGUCGCCGGc- -3'
miRNA:   3'- -UAGUCGU---------CGCUCGCG--GCGGCGGUCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.