miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23938 3' -62.3 NC_005262.1 + 11080 0.67 0.289891
Target:  5'- cGUCAGCAGCGcggccucguccGGCGUCGgCCGgCGGc- -3'
miRNA:   3'- -UAGUCGUCGC-----------UCGCGGC-GGCgGUCuu -5'
23938 3' -62.3 NC_005262.1 + 62577 0.67 0.282885
Target:  5'- --aGGCGGCGAGCuuUGCCGCCu--- -3'
miRNA:   3'- uagUCGUCGCUCGcgGCGGCGGucuu -5'
23938 3' -62.3 NC_005262.1 + 4577 0.67 0.282885
Target:  5'- -cCAGCGGCG-GCGCUGCUcggGCguGAGc -3'
miRNA:   3'- uaGUCGUCGCuCGCGGCGG---CGguCUU- -5'
23938 3' -62.3 NC_005262.1 + 24942 0.67 0.282885
Target:  5'- -cCAGCGuugacGCGAGCGCUGCCGUg---- -3'
miRNA:   3'- uaGUCGU-----CGCUCGCGGCGGCGgucuu -5'
23938 3' -62.3 NC_005262.1 + 17125 0.67 0.282885
Target:  5'- cAUCGGCgGGCGucGGUGCCGgCGCCAu-- -3'
miRNA:   3'- -UAGUCG-UCGC--UCGCGGCgGCGGUcuu -5'
23938 3' -62.3 NC_005262.1 + 13676 0.67 0.282885
Target:  5'- cUCGGuCAGCGAGCGCU-CgGCCGGc- -3'
miRNA:   3'- uAGUC-GUCGCUCGCGGcGgCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 29295 0.67 0.276013
Target:  5'- cGUCucGCAGaaguCGcGCGCCGCCGCgCGGAu -3'
miRNA:   3'- -UAGu-CGUC----GCuCGCGGCGGCG-GUCUu -5'
23938 3' -62.3 NC_005262.1 + 46793 0.67 0.276013
Target:  5'- uUCAGCAcGaCGAGCGCgCGCUcgGCCGGc- -3'
miRNA:   3'- uAGUCGU-C-GCUCGCG-GCGG--CGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 46428 0.67 0.276013
Target:  5'- gGUCcGCAGgGGcccgccGCGCCGCCcgcGCCGGAc -3'
miRNA:   3'- -UAGuCGUCgCU------CGCGGCGG---CGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 50322 0.67 0.276013
Target:  5'- -cCGGCcGC-AGCGcCCGCCGCgCAGGAc -3'
miRNA:   3'- uaGUCGuCGcUCGC-GGCGGCG-GUCUU- -5'
23938 3' -62.3 NC_005262.1 + 17291 0.67 0.269275
Target:  5'- --gGGCAG-GGGCGUCGCgGUCGGAGu -3'
miRNA:   3'- uagUCGUCgCUCGCGGCGgCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 49228 0.67 0.269275
Target:  5'- ---uGCGcGUGAGCGCCGCgGCgAGAc -3'
miRNA:   3'- uaguCGU-CGCUCGCGGCGgCGgUCUu -5'
23938 3' -62.3 NC_005262.1 + 22911 0.67 0.269275
Target:  5'- gGUCGGUucucguguGCG-GUGCCGCUGCCGGc- -3'
miRNA:   3'- -UAGUCGu-------CGCuCGCGGCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 56546 0.67 0.269275
Target:  5'- cGUCgAGCAGCGcgaggGGCGCaucauCCGCCAGGg -3'
miRNA:   3'- -UAG-UCGUCGC-----UCGCGgc---GGCGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 22536 0.68 0.262671
Target:  5'- aAUCuGC-GUGAuCGCCGCCGUCAGGu -3'
miRNA:   3'- -UAGuCGuCGCUcGCGGCGGCGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 16083 0.68 0.262671
Target:  5'- --aGGCGGCGAGcCGCCGCCcgGCgCGGu- -3'
miRNA:   3'- uagUCGUCGCUC-GCGGCGG--CG-GUCuu -5'
23938 3' -62.3 NC_005262.1 + 17259 0.68 0.256199
Target:  5'- -gCGGCGGCcGGCGCCG-CGCUGGGc -3'
miRNA:   3'- uaGUCGUCGcUCGCGGCgGCGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 46535 0.68 0.243647
Target:  5'- -gCAGCccAGCGcGGCGCCgGCCGCCGc-- -3'
miRNA:   3'- uaGUCG--UCGC-UCGCGG-CGGCGGUcuu -5'
23938 3' -62.3 NC_005262.1 + 59693 0.68 0.243647
Target:  5'- gAUCGGCGugccgccacGCGGGCGCuaCGUCGCCGGc- -3'
miRNA:   3'- -UAGUCGU---------CGCUCGCG--GCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 707 0.68 0.243647
Target:  5'- uUCAGCAGCGccuuGCacGCCGCCGCa---- -3'
miRNA:   3'- uAGUCGUCGCu---CG--CGGCGGCGgucuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.