miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23938 3' -62.3 NC_005262.1 + 707 0.68 0.243647
Target:  5'- uUCAGCAGCGccuuGCacGCCGCCGCa---- -3'
miRNA:   3'- uAGUCGUCGCu---CG--CGGCGGCGgucuu -5'
23938 3' -62.3 NC_005262.1 + 2769 0.67 0.297033
Target:  5'- -aCGGCGGCGGGUGCCGCauCCu--- -3'
miRNA:   3'- uaGUCGUCGCUCGCGGCGgcGGucuu -5'
23938 3' -62.3 NC_005262.1 + 4577 0.67 0.282885
Target:  5'- -cCAGCGGCG-GCGCUGCUcggGCguGAGc -3'
miRNA:   3'- uaGUCGUCGCuCGCGGCGG---CGguCUU- -5'
23938 3' -62.3 NC_005262.1 + 10491 0.66 0.319275
Target:  5'- -cCAGCAGC-AGCGCCagcaugGCgGCCAGc- -3'
miRNA:   3'- uaGUCGUCGcUCGCGG------CGgCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 11080 0.67 0.289891
Target:  5'- cGUCAGCAGCGcggccucguccGGCGUCGgCCGgCGGc- -3'
miRNA:   3'- -UAGUCGUCGC-----------UCGCGGC-GGCgGUCuu -5'
23938 3' -62.3 NC_005262.1 + 11645 0.66 0.310977
Target:  5'- cUCGGCGGCGccGGCGUCgcgcugcacgcugGCCGgCAGAGc -3'
miRNA:   3'- uAGUCGUCGC--UCGCGG-------------CGGCgGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 12563 0.66 0.326187
Target:  5'- -gCGGCGGCgcucgucGAGCugcuGCUGCCGCCGGc- -3'
miRNA:   3'- uaGUCGUCG-------CUCG----CGGCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 13478 0.74 0.093309
Target:  5'- ---cGCGGCGGGCGCUGCgGCCGGc- -3'
miRNA:   3'- uaguCGUCGCUCGCGGCGgCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 13676 0.67 0.282885
Target:  5'- cUCGGuCAGCGAGCGCU-CgGCCGGc- -3'
miRNA:   3'- uAGUC-GUCGCUCGCGGcGgCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 13813 0.73 0.101375
Target:  5'- cAUCGGCgggAGCGGGCGCCGCUGUCu--- -3'
miRNA:   3'- -UAGUCG---UCGCUCGCGGCGGCGGucuu -5'
23938 3' -62.3 NC_005262.1 + 14027 0.69 0.203704
Target:  5'- -gCGGCAGCGgccggagccucgGGCGCgggCGCCGCCGGc- -3'
miRNA:   3'- uaGUCGUCGC------------UCGCG---GCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 16083 0.68 0.262671
Target:  5'- --aGGCGGCGAGcCGCCGCCcgGCgCGGu- -3'
miRNA:   3'- uagUCGUCGCUC-GCGGCGG--CG-GUCuu -5'
23938 3' -62.3 NC_005262.1 + 16351 0.66 0.350838
Target:  5'- cUCGGC-GCGcugaucGGCGCCGCCGCg---- -3'
miRNA:   3'- uAGUCGuCGC------UCGCGGCGGCGgucuu -5'
23938 3' -62.3 NC_005262.1 + 17125 0.67 0.282885
Target:  5'- cAUCGGCgGGCGucGGUGCCGgCGCCAu-- -3'
miRNA:   3'- -UAGUCG-UCGC--UCGCGGCgGCGGUcuu -5'
23938 3' -62.3 NC_005262.1 + 17259 0.68 0.256199
Target:  5'- -gCGGCGGCcGGCGCCG-CGCUGGGc -3'
miRNA:   3'- uaGUCGUCGcUCGCGGCgGCGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 17291 0.67 0.269275
Target:  5'- --gGGCAG-GGGCGUCGCgGUCGGAGu -3'
miRNA:   3'- uagUCGUCgCUCGCGGCGgCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 18239 0.73 0.098616
Target:  5'- -aCAGCAgcGCGAGCGaauccuUGCCGCCGGAAa -3'
miRNA:   3'- uaGUCGU--CGCUCGCg-----GCGGCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 21380 0.7 0.17876
Target:  5'- -gCGGcCGGCuGGCGCCGCCugaaaGCCGGAGa -3'
miRNA:   3'- uaGUC-GUCGcUCGCGGCGG-----CGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 22132 0.76 0.061345
Target:  5'- -cCGGCGGCGAuGaCGgCGCCGCCGGAAa -3'
miRNA:   3'- uaGUCGUCGCU-C-GCgGCGGCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 22536 0.68 0.262671
Target:  5'- aAUCuGC-GUGAuCGCCGCCGUCAGGu -3'
miRNA:   3'- -UAGuCGuCGCUcGCGGCGGCGGUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.