miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23938 3' -62.3 NC_005262.1 + 22805 1.04 0.000437
Target:  5'- cAUCAGCAGCGAGCGCCGCCGCCAGAAa -3'
miRNA:   3'- -UAGUCGUCGCUCGCGGCGGCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 22911 0.67 0.269275
Target:  5'- gGUCGGUucucguguGCG-GUGCCGCUGCCGGc- -3'
miRNA:   3'- -UAGUCGu-------CGCuCGCGGCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 24942 0.67 0.282885
Target:  5'- -cCAGCGuugacGCGAGCGCUGCCGUg---- -3'
miRNA:   3'- uaGUCGU-----CGCUCGCGGCGGCGgucuu -5'
23938 3' -62.3 NC_005262.1 + 27555 0.66 0.334784
Target:  5'- cUCAGCcccGGCGAGgaCGCCGCgcagCGCgAGAAg -3'
miRNA:   3'- uAGUCG---UCGCUC--GCGGCG----GCGgUCUU- -5'
23938 3' -62.3 NC_005262.1 + 27815 0.66 0.326961
Target:  5'- cAUCGGUAGCGAgaaGCGCgGCCGgUCuGAc -3'
miRNA:   3'- -UAGUCGUCGCU---CGCGgCGGC-GGuCUu -5'
23938 3' -62.3 NC_005262.1 + 28412 0.66 0.334784
Target:  5'- -gCGGUAuUGAGCGCCGCgugCGCCAGc- -3'
miRNA:   3'- uaGUCGUcGCUCGCGGCG---GCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 29295 0.67 0.276013
Target:  5'- cGUCucGCAGaaguCGcGCGCCGCCGCgCGGAu -3'
miRNA:   3'- -UAGu-CGUC----GCuCGCGGCGGCG-GUCUu -5'
23938 3' -62.3 NC_005262.1 + 29645 0.75 0.074675
Target:  5'- cAUCGGCAGCGAGCGgcaUGCCGCCc--- -3'
miRNA:   3'- -UAGUCGUCGCUCGCg--GCGGCGGucuu -5'
23938 3' -62.3 NC_005262.1 + 30877 0.66 0.350838
Target:  5'- --aGGCgcuGGCGAGCGUcgcgcgugcgaCGCCGCCGGc- -3'
miRNA:   3'- uagUCG---UCGCUCGCG-----------GCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 32306 0.66 0.342743
Target:  5'- cGUCgaGGCAGCGcguGCGCUguucauggGCCGUCAGGc -3'
miRNA:   3'- -UAG--UCGUCGCu--CGCGG--------CGGCGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 35244 0.66 0.350838
Target:  5'- gAUCGGCAGCGgcugGGCGCCcCCGgC-GAAc -3'
miRNA:   3'- -UAGUCGUCGC----UCGCGGcGGCgGuCUU- -5'
23938 3' -62.3 NC_005262.1 + 35836 0.69 0.225782
Target:  5'- --gAGCGGCGucGGCGCCGCgacCGcCCAGAu -3'
miRNA:   3'- uagUCGUCGC--UCGCGGCG---GC-GGUCUu -5'
23938 3' -62.3 NC_005262.1 + 36560 0.69 0.220079
Target:  5'- ---uGCAGCGAaa-CCGCCGCCAGAu -3'
miRNA:   3'- uaguCGUCGCUcgcGGCGGCGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 39509 0.69 0.193382
Target:  5'- --gGGCGGCGAGCGUCG-CGCCGa-- -3'
miRNA:   3'- uagUCGUCGCUCGCGGCgGCGGUcuu -5'
23938 3' -62.3 NC_005262.1 + 41649 0.7 0.183522
Target:  5'- cUCGGCGauGCGGGCaGCCGCggcgGCCAGAc -3'
miRNA:   3'- uAGUCGU--CGCUCG-CGGCGg---CGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 42114 0.84 0.016463
Target:  5'- -aCAGCAGCGcGGCGCCGCCGCuCAGGu -3'
miRNA:   3'- uaGUCGUCGC-UCGCGGCGGCG-GUCUu -5'
23938 3' -62.3 NC_005262.1 + 43205 0.66 0.319275
Target:  5'- -aCAGCccuGCGGcGCGCCGCgcgcugcuCGCCGGGc -3'
miRNA:   3'- uaGUCGu--CGCU-CGCGGCG--------GCGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 45109 0.7 0.188395
Target:  5'- cUCAacuCGGCGGGUGCCGCgaacaccgcgCGCCAGAAc -3'
miRNA:   3'- uAGUc--GUCGCUCGCGGCG----------GCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 46428 0.67 0.276013
Target:  5'- gGUCcGCAGgGGcccgccGCGCCGCCcgcGCCGGAc -3'
miRNA:   3'- -UAGuCGUCgCU------CGCGGCGG---CGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 46535 0.68 0.243647
Target:  5'- -gCAGCccAGCGcGGCGCCgGCCGCCGc-- -3'
miRNA:   3'- uaGUCG--UCGC-UCGCGG-CGGCGGUcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.