Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 46793 | 0.67 | 0.276013 |
Target: 5'- uUCAGCAcGaCGAGCGCgCGCUcgGCCGGc- -3' miRNA: 3'- uAGUCGU-C-GCUCGCG-GCGG--CGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 47444 | 0.67 | 0.304311 |
Target: 5'- -gCGGCGGCGccgaucagcGCGCCGa-GCCAGAGg -3' miRNA: 3'- uaGUCGUCGCu--------CGCGGCggCGGUCUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 49228 | 0.67 | 0.269275 |
Target: 5'- ---uGCGcGUGAGCGCCGCgGCgAGAc -3' miRNA: 3'- uaguCGU-CGCUCGCGGCGgCGgUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 49418 | 0.67 | 0.304311 |
Target: 5'- gAUCAGCAcauGCG-GCuuaucaCCGCCGCCAGu- -3' miRNA: 3'- -UAGUCGU---CGCuCGc-----GGCGGCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 50322 | 0.67 | 0.276013 |
Target: 5'- -cCGGCcGC-AGCGcCCGCCGCgCAGGAc -3' miRNA: 3'- uaGUCGuCGcUCGC-GGCGGCG-GUCUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 51233 | 0.73 | 0.098616 |
Target: 5'- -gCAGCAGCucgacGAGCGCCGCCGCg---- -3' miRNA: 3'- uaGUCGUCG-----CUCGCGGCGGCGgucuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 56546 | 0.67 | 0.269275 |
Target: 5'- cGUCgAGCAGCGcgaggGGCGCaucauCCGCCAGGg -3' miRNA: 3'- -UAG-UCGUCGC-----UCGCGgc---GGCGGUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 57151 | 0.66 | 0.334784 |
Target: 5'- -aCGGCGacGCGAucgaaGCGCCGCCGCaCAucGAAu -3' miRNA: 3'- uaGUCGU--CGCU-----CGCGGCGGCG-GU--CUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 57220 | 0.66 | 0.319275 |
Target: 5'- gGUCGGCGgcaucGCGA-CGCgCGCCGCCAa-- -3' miRNA: 3'- -UAGUCGU-----CGCUcGCG-GCGGCGGUcuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 57298 | 0.66 | 0.311725 |
Target: 5'- -gCAGCAGaaCGAGCGCCGCauCGagCAGAu -3' miRNA: 3'- uaGUCGUC--GCUCGCGGCG--GCg-GUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 57474 | 0.69 | 0.225782 |
Target: 5'- --aAGCGGCGGGCGCCgacgagagGCgGCCGGc- -3' miRNA: 3'- uagUCGUCGCUCGCGG--------CGgCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 58769 | 0.69 | 0.220079 |
Target: 5'- -cCGGcCGGCGAGCaaCUGCCGCUGGAGg -3' miRNA: 3'- uaGUC-GUCGCUCGc-GGCGGCGGUCUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 59217 | 0.66 | 0.334784 |
Target: 5'- cUCAcGCccgAGC-AGCGCCGCCGCUGGc- -3' miRNA: 3'- uAGU-CG---UCGcUCGCGGCGGCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 59693 | 0.68 | 0.243647 |
Target: 5'- gAUCGGCGugccgccacGCGGGCGCuaCGUCGCCGGc- -3' miRNA: 3'- -UAGUCGU---------CGCUCGCG--GCGGCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 62577 | 0.67 | 0.282885 |
Target: 5'- --aGGCGGCGAGCuuUGCCGCCu--- -3' miRNA: 3'- uagUCGUCGCUCGcgGCGGCGGucuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 63088 | 0.66 | 0.314728 |
Target: 5'- -gCGGCGGCGugcaaGGCGCugcugaacuaccuuuCGCCGCCGGc- -3' miRNA: 3'- uaGUCGUCGC-----UCGCG---------------GCGGCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 63537 | 0.66 | 0.318514 |
Target: 5'- cUCAGCGcguguacguccgcGCGAaauguccCGCCGCCGCCGGc- -3' miRNA: 3'- uAGUCGU-------------CGCUc------GCGGCGGCGGUCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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