miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23938 3' -62.3 NC_005262.1 + 63537 0.66 0.318514
Target:  5'- cUCAGCGcguguacguccgcGCGAaauguccCGCCGCCGCCGGc- -3'
miRNA:   3'- uAGUCGU-------------CGCUc------GCGGCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 63088 0.66 0.314728
Target:  5'- -gCGGCGGCGugcaaGGCGCugcugaacuaccuuuCGCCGCCGGc- -3'
miRNA:   3'- uaGUCGUCGC-----UCGCG---------------GCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 62577 0.67 0.282885
Target:  5'- --aGGCGGCGAGCuuUGCCGCCu--- -3'
miRNA:   3'- uagUCGUCGCUCGcgGCGGCGGucuu -5'
23938 3' -62.3 NC_005262.1 + 59693 0.68 0.243647
Target:  5'- gAUCGGCGugccgccacGCGGGCGCuaCGUCGCCGGc- -3'
miRNA:   3'- -UAGUCGU---------CGCUCGCG--GCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 59217 0.66 0.334784
Target:  5'- cUCAcGCccgAGC-AGCGCCGCCGCUGGc- -3'
miRNA:   3'- uAGU-CG---UCGcUCGCGGCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 58769 0.69 0.220079
Target:  5'- -cCGGcCGGCGAGCaaCUGCCGCUGGAGg -3'
miRNA:   3'- uaGUC-GUCGCUCGc-GGCGGCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 57474 0.69 0.225782
Target:  5'- --aAGCGGCGGGCGCCgacgagagGCgGCCGGc- -3'
miRNA:   3'- uagUCGUCGCUCGCGG--------CGgCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 57298 0.66 0.311725
Target:  5'- -gCAGCAGaaCGAGCGCCGCauCGagCAGAu -3'
miRNA:   3'- uaGUCGUC--GCUCGCGGCG--GCg-GUCUu -5'
23938 3' -62.3 NC_005262.1 + 57220 0.66 0.319275
Target:  5'- gGUCGGCGgcaucGCGA-CGCgCGCCGCCAa-- -3'
miRNA:   3'- -UAGUCGU-----CGCUcGCG-GCGGCGGUcuu -5'
23938 3' -62.3 NC_005262.1 + 57151 0.66 0.334784
Target:  5'- -aCGGCGacGCGAucgaaGCGCCGCCGCaCAucGAAu -3'
miRNA:   3'- uaGUCGU--CGCU-----CGCGGCGGCG-GU--CUU- -5'
23938 3' -62.3 NC_005262.1 + 56546 0.67 0.269275
Target:  5'- cGUCgAGCAGCGcgaggGGCGCaucauCCGCCAGGg -3'
miRNA:   3'- -UAG-UCGUCGC-----UCGCGgc---GGCGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 51233 0.73 0.098616
Target:  5'- -gCAGCAGCucgacGAGCGCCGCCGCg---- -3'
miRNA:   3'- uaGUCGUCG-----CUCGCGGCGGCGgucuu -5'
23938 3' -62.3 NC_005262.1 + 50322 0.67 0.276013
Target:  5'- -cCGGCcGC-AGCGcCCGCCGCgCAGGAc -3'
miRNA:   3'- uaGUCGuCGcUCGC-GGCGGCG-GUCUU- -5'
23938 3' -62.3 NC_005262.1 + 49418 0.67 0.304311
Target:  5'- gAUCAGCAcauGCG-GCuuaucaCCGCCGCCAGu- -3'
miRNA:   3'- -UAGUCGU---CGCuCGc-----GGCGGCGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 49228 0.67 0.269275
Target:  5'- ---uGCGcGUGAGCGCCGCgGCgAGAc -3'
miRNA:   3'- uaguCGU-CGCUCGCGGCGgCGgUCUu -5'
23938 3' -62.3 NC_005262.1 + 47444 0.67 0.304311
Target:  5'- -gCGGCGGCGccgaucagcGCGCCGa-GCCAGAGg -3'
miRNA:   3'- uaGUCGUCGCu--------CGCGGCggCGGUCUU- -5'
23938 3' -62.3 NC_005262.1 + 46793 0.67 0.276013
Target:  5'- uUCAGCAcGaCGAGCGCgCGCUcgGCCGGc- -3'
miRNA:   3'- uAGUCGU-C-GCUCGCG-GCGG--CGGUCuu -5'
23938 3' -62.3 NC_005262.1 + 46535 0.68 0.243647
Target:  5'- -gCAGCccAGCGcGGCGCCgGCCGCCGc-- -3'
miRNA:   3'- uaGUCG--UCGC-UCGCGG-CGGCGGUcuu -5'
23938 3' -62.3 NC_005262.1 + 46428 0.67 0.276013
Target:  5'- gGUCcGCAGgGGcccgccGCGCCGCCcgcGCCGGAc -3'
miRNA:   3'- -UAGuCGUCgCU------CGCGGCGG---CGGUCUu -5'
23938 3' -62.3 NC_005262.1 + 45109 0.7 0.188395
Target:  5'- cUCAacuCGGCGGGUGCCGCgaacaccgcgCGCCAGAAc -3'
miRNA:   3'- uAGUc--GUCGCUCGCGGCG----------GCGGUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.