Results 21 - 40 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 43205 | 0.66 | 0.319275 |
Target: 5'- -aCAGCccuGCGGcGCGCCGCgcgcugcuCGCCGGGc -3' miRNA: 3'- uaGUCGu--CGCU-CGCGGCG--------GCGGUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 42114 | 0.84 | 0.016463 |
Target: 5'- -aCAGCAGCGcGGCGCCGCCGCuCAGGu -3' miRNA: 3'- uaGUCGUCGC-UCGCGGCGGCG-GUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 41649 | 0.7 | 0.183522 |
Target: 5'- cUCGGCGauGCGGGCaGCCGCggcgGCCAGAc -3' miRNA: 3'- uAGUCGU--CGCUCG-CGGCGg---CGGUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 39509 | 0.69 | 0.193382 |
Target: 5'- --gGGCGGCGAGCGUCG-CGCCGa-- -3' miRNA: 3'- uagUCGUCGCUCGCGGCgGCGGUcuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 36560 | 0.69 | 0.220079 |
Target: 5'- ---uGCAGCGAaa-CCGCCGCCAGAu -3' miRNA: 3'- uaguCGUCGCUcgcGGCGGCGGUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 35836 | 0.69 | 0.225782 |
Target: 5'- --gAGCGGCGucGGCGCCGCgacCGcCCAGAu -3' miRNA: 3'- uagUCGUCGC--UCGCGGCG---GC-GGUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 35244 | 0.66 | 0.350838 |
Target: 5'- gAUCGGCAGCGgcugGGCGCCcCCGgC-GAAc -3' miRNA: 3'- -UAGUCGUCGC----UCGCGGcGGCgGuCUU- -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 32306 | 0.66 | 0.342743 |
Target: 5'- cGUCgaGGCAGCGcguGCGCUguucauggGCCGUCAGGc -3' miRNA: 3'- -UAG--UCGUCGCu--CGCGG--------CGGCGGUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 30877 | 0.66 | 0.350838 |
Target: 5'- --aGGCgcuGGCGAGCGUcgcgcgugcgaCGCCGCCGGc- -3' miRNA: 3'- uagUCG---UCGCUCGCG-----------GCGGCGGUCuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 29645 | 0.75 | 0.074675 |
Target: 5'- cAUCGGCAGCGAGCGgcaUGCCGCCc--- -3' miRNA: 3'- -UAGUCGUCGCUCGCg--GCGGCGGucuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 29295 | 0.67 | 0.276013 |
Target: 5'- cGUCucGCAGaaguCGcGCGCCGCCGCgCGGAu -3' miRNA: 3'- -UAGu-CGUC----GCuCGCGGCGGCG-GUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 28412 | 0.66 | 0.334784 |
Target: 5'- -gCGGUAuUGAGCGCCGCgugCGCCAGc- -3' miRNA: 3'- uaGUCGUcGCUCGCGGCG---GCGGUCuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 27815 | 0.66 | 0.326961 |
Target: 5'- cAUCGGUAGCGAgaaGCGCgGCCGgUCuGAc -3' miRNA: 3'- -UAGUCGUCGCU---CGCGgCGGC-GGuCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 27555 | 0.66 | 0.334784 |
Target: 5'- cUCAGCcccGGCGAGgaCGCCGCgcagCGCgAGAAg -3' miRNA: 3'- uAGUCG---UCGCUC--GCGGCG----GCGgUCUU- -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 24942 | 0.67 | 0.282885 |
Target: 5'- -cCAGCGuugacGCGAGCGCUGCCGUg---- -3' miRNA: 3'- uaGUCGU-----CGCUCGCGGCGGCGgucuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 22911 | 0.67 | 0.269275 |
Target: 5'- gGUCGGUucucguguGCG-GUGCCGCUGCCGGc- -3' miRNA: 3'- -UAGUCGu-------CGCuCGCGGCGGCGGUCuu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 22805 | 1.04 | 0.000437 |
Target: 5'- cAUCAGCAGCGAGCGCCGCCGCCAGAAa -3' miRNA: 3'- -UAGUCGUCGCUCGCGGCGGCGGUCUU- -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 22536 | 0.68 | 0.262671 |
Target: 5'- aAUCuGC-GUGAuCGCCGCCGUCAGGu -3' miRNA: 3'- -UAGuCGuCGCUcGCGGCGGCGGUCUu -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 22132 | 0.76 | 0.061345 |
Target: 5'- -cCGGCGGCGAuGaCGgCGCCGCCGGAAa -3' miRNA: 3'- uaGUCGUCGCU-C-GCgGCGGCGGUCUU- -5' |
|||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 21380 | 0.7 | 0.17876 |
Target: 5'- -gCGGcCGGCuGGCGCCGCCugaaaGCCGGAGa -3' miRNA: 3'- uaGUC-GUCGcUCGCGGCGG-----CGGUCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home