Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 22536 | 0.68 | 0.262671 |
Target: 5'- aAUCuGC-GUGAuCGCCGCCGUCAGGu -3' miRNA: 3'- -UAGuCGuCGCUcGCGGCGGCGGUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 59217 | 0.66 | 0.334784 |
Target: 5'- cUCAcGCccgAGC-AGCGCCGCCGCUGGc- -3' miRNA: 3'- uAGU-CG---UCGcUCGCGGCGGCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 57151 | 0.66 | 0.334784 |
Target: 5'- -aCGGCGacGCGAucgaaGCGCCGCCGCaCAucGAAu -3' miRNA: 3'- uaGUCGU--CGCU-----CGCGGCGGCG-GU--CUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 28412 | 0.66 | 0.334784 |
Target: 5'- -gCGGUAuUGAGCGCCGCgugCGCCAGc- -3' miRNA: 3'- uaGUCGUcGCUCGCGGCG---GCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 43205 | 0.66 | 0.319275 |
Target: 5'- -aCAGCccuGCGGcGCGCCGCgcgcugcuCGCCGGGc -3' miRNA: 3'- uaGUCGu--CGCU-CGCGGCG--------GCGGUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 49418 | 0.67 | 0.304311 |
Target: 5'- gAUCAGCAcauGCG-GCuuaucaCCGCCGCCAGu- -3' miRNA: 3'- -UAGUCGU---CGCuCGc-----GGCGGCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 47444 | 0.67 | 0.304311 |
Target: 5'- -gCGGCGGCGccgaucagcGCGCCGa-GCCAGAGg -3' miRNA: 3'- uaGUCGUCGCu--------CGCGGCggCGGUCUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 11080 | 0.67 | 0.289891 |
Target: 5'- cGUCAGCAGCGcggccucguccGGCGUCGgCCGgCGGc- -3' miRNA: 3'- -UAGUCGUCGC-----------UCGCGGC-GGCgGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 24942 | 0.67 | 0.282885 |
Target: 5'- -cCAGCGuugacGCGAGCGCUGCCGUg---- -3' miRNA: 3'- uaGUCGU-----CGCUCGCGGCGGCGgucuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 17125 | 0.67 | 0.282885 |
Target: 5'- cAUCGGCgGGCGucGGUGCCGgCGCCAu-- -3' miRNA: 3'- -UAGUCG-UCGC--UCGCGGCgGCGGUcuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 13676 | 0.67 | 0.282885 |
Target: 5'- cUCGGuCAGCGAGCGCU-CgGCCGGc- -3' miRNA: 3'- uAGUC-GUCGCUCGCGGcGgCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 29295 | 0.67 | 0.276013 |
Target: 5'- cGUCucGCAGaaguCGcGCGCCGCCGCgCGGAu -3' miRNA: 3'- -UAGu-CGUC----GCuCGCGGCGGCG-GUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 46793 | 0.67 | 0.276013 |
Target: 5'- uUCAGCAcGaCGAGCGCgCGCUcgGCCGGc- -3' miRNA: 3'- uAGUCGU-C-GCUCGCG-GCGG--CGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 22911 | 0.67 | 0.269275 |
Target: 5'- gGUCGGUucucguguGCG-GUGCCGCUGCCGGc- -3' miRNA: 3'- -UAGUCGu-------CGCuCGCGGCGGCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 49228 | 0.67 | 0.269275 |
Target: 5'- ---uGCGcGUGAGCGCCGCgGCgAGAc -3' miRNA: 3'- uaguCGU-CGCUCGCGGCGgCGgUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 17291 | 0.67 | 0.269275 |
Target: 5'- --gGGCAG-GGGCGUCGCgGUCGGAGu -3' miRNA: 3'- uagUCGUCgCUCGCGGCGgCGGUCUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 30877 | 0.66 | 0.350838 |
Target: 5'- --aGGCgcuGGCGAGCGUcgcgcgugcgaCGCCGCCGGc- -3' miRNA: 3'- uagUCG---UCGCUCGCG-----------GCGGCGGUCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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