Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23938 | 3' | -62.3 | NC_005262.1 | + | 13478 | 0.74 | 0.093309 |
Target: 5'- ---cGCGGCGGGCGCUGCgGCCGGc- -3' miRNA: 3'- uaguCGUCGCUCGCGGCGgCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 51233 | 0.73 | 0.098616 |
Target: 5'- -gCAGCAGCucgacGAGCGCCGCCGCg---- -3' miRNA: 3'- uaGUCGUCG-----CUCGCGGCGGCGgucuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 707 | 0.68 | 0.243647 |
Target: 5'- uUCAGCAGCGccuuGCacGCCGCCGCa---- -3' miRNA: 3'- uAGUCGUCGCu---CG--CGGCGGCGgucuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 57474 | 0.69 | 0.225782 |
Target: 5'- --aAGCGGCGGGCGCCgacgagagGCgGCCGGc- -3' miRNA: 3'- uagUCGUCGCUCGCGG--------CGgCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 13813 | 0.73 | 0.101375 |
Target: 5'- cAUCGGCgggAGCGGGCGCCGCUGUCu--- -3' miRNA: 3'- -UAGUCG---UCGCUCGCGGCGGCGGucuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 22132 | 0.76 | 0.061345 |
Target: 5'- -cCGGCGGCGAuGaCGgCGCCGCCGGAAa -3' miRNA: 3'- uaGUCGUCGCU-C-GCgGCGGCGGUCUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 58769 | 0.69 | 0.220079 |
Target: 5'- -cCGGcCGGCGAGCaaCUGCCGCUGGAGg -3' miRNA: 3'- uaGUC-GUCGCUCGc-GGCGGCGGUCUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 39509 | 0.69 | 0.193382 |
Target: 5'- --gGGCGGCGAGCGUCG-CGCCGa-- -3' miRNA: 3'- uagUCGUCGCUCGCGGCgGCGGUcuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 18239 | 0.73 | 0.098616 |
Target: 5'- -aCAGCAgcGCGAGCGaauccuUGCCGCCGGAAa -3' miRNA: 3'- uaGUCGU--CGCUCGCg-----GCGGCGGUCUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 17259 | 0.68 | 0.256199 |
Target: 5'- -gCGGCGGCcGGCGCCG-CGCUGGGc -3' miRNA: 3'- uaGUCGUCGcUCGCGGCgGCGGUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 21380 | 0.7 | 0.17876 |
Target: 5'- -gCGGcCGGCuGGCGCCGCCugaaaGCCGGAGa -3' miRNA: 3'- uaGUC-GUCGcUCGCGGCGG-----CGGUCUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 41649 | 0.7 | 0.183522 |
Target: 5'- cUCGGCGauGCGGGCaGCCGCggcgGCCAGAc -3' miRNA: 3'- uAGUCGU--CGCUCG-CGGCGg---CGGUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 14027 | 0.69 | 0.203704 |
Target: 5'- -gCGGCAGCGgccggagccucgGGCGCgggCGCCGCCGGc- -3' miRNA: 3'- uaGUCGUCGC------------UCGCG---GCGGCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 36560 | 0.69 | 0.220079 |
Target: 5'- ---uGCAGCGAaa-CCGCCGCCAGAu -3' miRNA: 3'- uaguCGUCGCUcgcGGCGGCGGUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 50322 | 0.67 | 0.276013 |
Target: 5'- -cCGGCcGC-AGCGcCCGCCGCgCAGGAc -3' miRNA: 3'- uaGUCGuCGcUCGC-GGCGGCG-GUCUU- -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 63537 | 0.66 | 0.318514 |
Target: 5'- cUCAGCGcguguacguccgcGCGAaauguccCGCCGCCGCCGGc- -3' miRNA: 3'- uAGUCGU-------------CGCUc------GCGGCGGCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 63088 | 0.66 | 0.314728 |
Target: 5'- -gCGGCGGCGugcaaGGCGCugcugaacuaccuuuCGCCGCCGGc- -3' miRNA: 3'- uaGUCGUCGC-----UCGCG---------------GCGGCGGUCuu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 57298 | 0.66 | 0.311725 |
Target: 5'- -gCAGCAGaaCGAGCGCCGCauCGagCAGAu -3' miRNA: 3'- uaGUCGUC--GCUCGCGGCG--GCg-GUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 35836 | 0.69 | 0.225782 |
Target: 5'- --gAGCGGCGucGGCGCCGCgacCGcCCAGAu -3' miRNA: 3'- uagUCGUCGC--UCGCGGCG---GC-GGUCUu -5' |
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23938 | 3' | -62.3 | NC_005262.1 | + | 56546 | 0.67 | 0.269275 |
Target: 5'- cGUCgAGCAGCGcgaggGGCGCaucauCCGCCAGGg -3' miRNA: 3'- -UAG-UCGUCGC-----UCGCGgc---GGCGGUCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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