miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23939 5' -52.9 NC_005262.1 + 7273 0.66 0.891887
Target:  5'- aCACCAgca-GgGGUGUCGCCGaUUCGa -3'
miRNA:   3'- -GUGGUaacaUgCCGCAGUGGCaAGGC- -5'
23939 5' -52.9 NC_005262.1 + 52142 0.66 0.891887
Target:  5'- gGCCAgcGUGCagcgcgacgccGGCGcCGCCGagCCGa -3'
miRNA:   3'- gUGGUaaCAUG-----------CCGCaGUGGCaaGGC- -5'
23939 5' -52.9 NC_005262.1 + 11687 0.66 0.87701
Target:  5'- gGCUuc---ACGGCGUCGCCGaggucgUCCGu -3'
miRNA:   3'- gUGGuaacaUGCCGCAGUGGCa-----AGGC- -5'
23939 5' -52.9 NC_005262.1 + 5603 0.66 0.87701
Target:  5'- aCACCGcg--GCGGCGUCGauGUUCgCGa -3'
miRNA:   3'- -GUGGUaacaUGCCGCAGUggCAAG-GC- -5'
23939 5' -52.9 NC_005262.1 + 38446 0.66 0.87701
Target:  5'- aCGCCGgacgACGGCacgcucGUCGCCGUaUCCu -3'
miRNA:   3'- -GUGGUaacaUGCCG------CAGUGGCA-AGGc -5'
23939 5' -52.9 NC_005262.1 + 951 0.66 0.869191
Target:  5'- uGCCAUccucGUACcGCGUCgaGCCGUggCCGa -3'
miRNA:   3'- gUGGUAa---CAUGcCGCAG--UGGCAa-GGC- -5'
23939 5' -52.9 NC_005262.1 + 33807 0.67 0.852826
Target:  5'- uGCCcUUGU-UGGCGUCGuCCGUggugCCa -3'
miRNA:   3'- gUGGuAACAuGCCGCAGU-GGCAa---GGc -5'
23939 5' -52.9 NC_005262.1 + 38883 0.67 0.852826
Target:  5'- cCGCCAUgccuCGGCGUCcuCCGgcuggCCGa -3'
miRNA:   3'- -GUGGUAacauGCCGCAGu-GGCaa---GGC- -5'
23939 5' -52.9 NC_005262.1 + 32896 0.67 0.847733
Target:  5'- uGCCAUccucgagcgcgaGCGGCGUCACCa-UCCGg -3'
miRNA:   3'- gUGGUAaca---------UGCCGCAGUGGcaAGGC- -5'
23939 5' -52.9 NC_005262.1 + 17019 0.67 0.844294
Target:  5'- cCGCCGUUGaUAcCGcGCGUCGCCGccuguacgaCCGg -3'
miRNA:   3'- -GUGGUAAC-AU-GC-CGCAGUGGCaa-------GGC- -5'
23939 5' -52.9 NC_005262.1 + 19384 0.67 0.83554
Target:  5'- uCGCCAUcgUGUGCGGCG-CGCgGgugguaUCCc -3'
miRNA:   3'- -GUGGUA--ACAUGCCGCaGUGgCa-----AGGc -5'
23939 5' -52.9 NC_005262.1 + 44698 0.67 0.83554
Target:  5'- aGCCGUUGgugACGGCGUgGCUGcaUCa -3'
miRNA:   3'- gUGGUAACa--UGCCGCAgUGGCaaGGc -5'
23939 5' -52.9 NC_005262.1 + 3176 0.67 0.817403
Target:  5'- uCGCCAgcGUGCgcauGGCGuUCGCCGUgCCc -3'
miRNA:   3'- -GUGGUaaCAUG----CCGC-AGUGGCAaGGc -5'
23939 5' -52.9 NC_005262.1 + 29169 0.67 0.817403
Target:  5'- gACCAUgcgucagGCGGcCGUCGCCGagCUGa -3'
miRNA:   3'- gUGGUAaca----UGCC-GCAGUGGCaaGGC- -5'
23939 5' -52.9 NC_005262.1 + 41826 0.68 0.808038
Target:  5'- aCACCGgaau-CGGCGUUACCGacCCu -3'
miRNA:   3'- -GUGGUaacauGCCGCAGUGGCaaGGc -5'
23939 5' -52.9 NC_005262.1 + 10292 0.68 0.808038
Target:  5'- gGCCGgccccUGCGGCGUCugcacuucgGCCGUgCCGa -3'
miRNA:   3'- gUGGUaac--AUGCCGCAG---------UGGCAaGGC- -5'
23939 5' -52.9 NC_005262.1 + 40645 0.68 0.78877
Target:  5'- gGCCAcggGcACGGCGUCAgCGacCCGa -3'
miRNA:   3'- gUGGUaa-CaUGCCGCAGUgGCaaGGC- -5'
23939 5' -52.9 NC_005262.1 + 25647 0.7 0.673595
Target:  5'- cCACCA--GUACGGCcUUGCCGUUCa- -3'
miRNA:   3'- -GUGGUaaCAUGCCGcAGUGGCAAGgc -5'
23939 5' -52.9 NC_005262.1 + 24743 0.7 0.651713
Target:  5'- aAUCGUcuUGUugGGCGUgguggCGCCGUUaCCGa -3'
miRNA:   3'- gUGGUA--ACAugCCGCA-----GUGGCAA-GGC- -5'
23939 5' -52.9 NC_005262.1 + 55771 0.71 0.61878
Target:  5'- aACCA--GUACGGCGaCAUCGUUgCGg -3'
miRNA:   3'- gUGGUaaCAUGCCGCaGUGGCAAgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.