Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23939 | 5' | -52.9 | NC_005262.1 | + | 55771 | 0.71 | 0.61878 |
Target: 5'- aACCA--GUACGGCGaCAUCGUUgCGg -3' miRNA: 3'- gUGGUaaCAUGCCGCaGUGGCAAgGC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 7273 | 0.66 | 0.891887 |
Target: 5'- aCACCAgca-GgGGUGUCGCCGaUUCGa -3' miRNA: 3'- -GUGGUaacaUgCCGCAGUGGCaAGGC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 38446 | 0.66 | 0.87701 |
Target: 5'- aCGCCGgacgACGGCacgcucGUCGCCGUaUCCu -3' miRNA: 3'- -GUGGUaacaUGCCG------CAGUGGCA-AGGc -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 5603 | 0.66 | 0.87701 |
Target: 5'- aCACCGcg--GCGGCGUCGauGUUCgCGa -3' miRNA: 3'- -GUGGUaacaUGCCGCAGUggCAAG-GC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 29169 | 0.67 | 0.817403 |
Target: 5'- gACCAUgcgucagGCGGcCGUCGCCGagCUGa -3' miRNA: 3'- gUGGUAaca----UGCC-GCAGUGGCaaGGC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 41826 | 0.68 | 0.808038 |
Target: 5'- aCACCGgaau-CGGCGUUACCGacCCu -3' miRNA: 3'- -GUGGUaacauGCCGCAGUGGCaaGGc -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 40645 | 0.68 | 0.78877 |
Target: 5'- gGCCAcggGcACGGCGUCAgCGacCCGa -3' miRNA: 3'- gUGGUaa-CaUGCCGCAGUgGCaaGGC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 24743 | 0.7 | 0.651713 |
Target: 5'- aAUCGUcuUGUugGGCGUgguggCGCCGUUaCCGa -3' miRNA: 3'- gUGGUA--ACAugCCGCA-----GUGGCAA-GGC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 25647 | 0.7 | 0.673595 |
Target: 5'- cCACCA--GUACGGCcUUGCCGUUCa- -3' miRNA: 3'- -GUGGUaaCAUGCCGcAGUGGCAAGgc -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 10292 | 0.68 | 0.808038 |
Target: 5'- gGCCGgccccUGCGGCGUCugcacuucgGCCGUgCCGa -3' miRNA: 3'- gUGGUaac--AUGCCGCAG---------UGGCAaGGC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 3176 | 0.67 | 0.817403 |
Target: 5'- uCGCCAgcGUGCgcauGGCGuUCGCCGUgCCc -3' miRNA: 3'- -GUGGUaaCAUG----CCGC-AGUGGCAaGGc -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 19384 | 0.67 | 0.83554 |
Target: 5'- uCGCCAUcgUGUGCGGCG-CGCgGgugguaUCCc -3' miRNA: 3'- -GUGGUA--ACAUGCCGCaGUGgCa-----AGGc -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 44698 | 0.67 | 0.83554 |
Target: 5'- aGCCGUUGgugACGGCGUgGCUGcaUCa -3' miRNA: 3'- gUGGUAACa--UGCCGCAgUGGCaaGGc -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 17019 | 0.67 | 0.844294 |
Target: 5'- cCGCCGUUGaUAcCGcGCGUCGCCGccuguacgaCCGg -3' miRNA: 3'- -GUGGUAAC-AU-GC-CGCAGUGGCaa-------GGC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 32896 | 0.67 | 0.847733 |
Target: 5'- uGCCAUccucgagcgcgaGCGGCGUCACCa-UCCGg -3' miRNA: 3'- gUGGUAaca---------UGCCGCAGUGGcaAGGC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 33807 | 0.67 | 0.852826 |
Target: 5'- uGCCcUUGU-UGGCGUCGuCCGUggugCCa -3' miRNA: 3'- gUGGuAACAuGCCGCAGU-GGCAa---GGc -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 38883 | 0.67 | 0.852826 |
Target: 5'- cCGCCAUgccuCGGCGUCcuCCGgcuggCCGa -3' miRNA: 3'- -GUGGUAacauGCCGCAGu-GGCaa---GGC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 951 | 0.66 | 0.869191 |
Target: 5'- uGCCAUccucGUACcGCGUCgaGCCGUggCCGa -3' miRNA: 3'- gUGGUAa---CAUGcCGCAG--UGGCAa-GGC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 11687 | 0.66 | 0.87701 |
Target: 5'- gGCUuc---ACGGCGUCGCCGaggucgUCCGu -3' miRNA: 3'- gUGGuaacaUGCCGCAGUGGCa-----AGGC- -5' |
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23939 | 5' | -52.9 | NC_005262.1 | + | 52142 | 0.66 | 0.891887 |
Target: 5'- gGCCAgcGUGCagcgcgacgccGGCGcCGCCGagCCGa -3' miRNA: 3'- gUGGUaaCAUG-----------CCGCaGUGGCaaGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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