Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23940 | 3' | -53.6 | NC_005262.1 | + | 2506 | 0.7 | 0.595446 |
|
Target: 5'- cGACC-CCgcgaggcUGGCCGCGCCG-AUCGa -3' miRNA: 3'- -UUGGaGGaa-----ACCGGCGUGGUaUAGCg -5' |
|||||||
| 23940 | 3' | -53.6 | NC_005262.1 | + | 42987 | 0.7 | 0.595446 |
|
Target: 5'- aAACCgcgCCg--GGCCGCuuCGUGUCGg -3' miRNA: 3'- -UUGGa--GGaaaCCGGCGugGUAUAGCg -5' |
|||||||
| 23940 | 3' | -53.6 | NC_005262.1 | + | 8811 | 0.71 | 0.540467 |
|
Target: 5'- cGCCuUCCUgaauGCCGCGCCAgauggCGCg -3' miRNA: 3'- uUGG-AGGAaac-CGGCGUGGUaua--GCG- -5' |
|||||||
| 23940 | 3' | -53.6 | NC_005262.1 | + | 46701 | 0.71 | 0.52966 |
|
Target: 5'- gGACCUCCUcgcGGCC-CGCCGcGUCGa -3' miRNA: 3'- -UUGGAGGAaa-CCGGcGUGGUaUAGCg -5' |
|||||||
| 23940 | 3' | -53.6 | NC_005262.1 | + | 41855 | 0.72 | 0.466723 |
|
Target: 5'- uGACCgCCUUgcgugugGuGCCGCACCGUAUaaUGCg -3' miRNA: 3'- -UUGGaGGAAa------C-CGGCGUGGUAUA--GCG- -5' |
|||||||
| 23940 | 3' | -53.6 | NC_005262.1 | + | 16880 | 0.72 | 0.436729 |
|
Target: 5'- cGGCCgcgcgCCg--GGCCGCACCAcacCGCa -3' miRNA: 3'- -UUGGa----GGaaaCCGGCGUGGUauaGCG- -5' |
|||||||
| 23940 | 3' | -53.6 | NC_005262.1 | + | 55534 | 0.73 | 0.41736 |
|
Target: 5'- cAGCUUCCUc-GGCCGCugCuu-UCGCg -3' miRNA: 3'- -UUGGAGGAaaCCGGCGugGuauAGCG- -5' |
|||||||
| 23940 | 3' | -53.6 | NC_005262.1 | + | 21906 | 1.1 | 0.00121 |
|
Target: 5'- cAACCUCCUUUGGCCGCACCAUAUCGCa -3' miRNA: 3'- -UUGGAGGAAACCGGCGUGGUAUAGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home