miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23940 5' -58.9 NC_005262.1 + 12243 0.66 0.518645
Target:  5'- -cGCGcGCgACCACgugguACGCGAGcCGGUCGc -3'
miRNA:   3'- caCGC-CG-UGGUG-----UGCGUUCcGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 49231 0.66 0.518645
Target:  5'- -gGCGGCGcgcaguCCGCGCGCGAGGUccgCGa -3'
miRNA:   3'- caCGCCGU------GGUGUGCGUUCCGccaGU- -5'
23940 5' -58.9 NC_005262.1 + 6047 0.66 0.518645
Target:  5'- gGUGCGGCACgAUAcCGCAccacgGGGuUGcGUCAg -3'
miRNA:   3'- -CACGCCGUGgUGU-GCGU-----UCC-GC-CAGU- -5'
23940 5' -58.9 NC_005262.1 + 40486 0.66 0.512494
Target:  5'- -cGCGGCGCCuugAUGCGCuugauggcgaacgacGGGGCGGg-- -3'
miRNA:   3'- caCGCCGUGG---UGUGCG---------------UUCCGCCagu -5'
23940 5' -58.9 NC_005262.1 + 47517 0.67 0.502309
Target:  5'- -cGCGaGCGgCGCGCaGCAAGGCauugugucgguucauGGUCGg -3'
miRNA:   3'- caCGC-CGUgGUGUG-CGUUCCG---------------CCAGU- -5'
23940 5' -58.9 NC_005262.1 + 19104 0.67 0.498259
Target:  5'- -cGCGGCgauGCCACguucggaucggGCGCG-GGCGcGUCGc -3'
miRNA:   3'- caCGCCG---UGGUG-----------UGCGUuCCGC-CAGU- -5'
23940 5' -58.9 NC_005262.1 + 61150 0.67 0.498259
Target:  5'- --cCGGCGCCGCGCagGCAuGGGCcgaucuGGUCAa -3'
miRNA:   3'- cacGCCGUGGUGUG--CGU-UCCG------CCAGU- -5'
23940 5' -58.9 NC_005262.1 + 54919 0.67 0.498259
Target:  5'- -gGCucGCACCugACGCugccGGGCGuGUCGc -3'
miRNA:   3'- caCGc-CGUGGugUGCGu---UCCGC-CAGU- -5'
23940 5' -58.9 NC_005262.1 + 8270 0.67 0.49624
Target:  5'- -aGCGGCcgaggaagcugcCCGCGucgcuCGCGAGGCGGcCAa -3'
miRNA:   3'- caCGCCGu-----------GGUGU-----GCGUUCCGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 9457 0.67 0.488201
Target:  5'- uGUGCGGCACCAUccUGCAcGGUauGGUg- -3'
miRNA:   3'- -CACGCCGUGGUGu-GCGUuCCG--CCAgu -5'
23940 5' -58.9 NC_005262.1 + 20595 0.67 0.478239
Target:  5'- -cGCGGCG-CGC-CGCAGGGCuGUUg -3'
miRNA:   3'- caCGCCGUgGUGuGCGUUCCGcCAGu -5'
23940 5' -58.9 NC_005262.1 + 8578 0.67 0.478239
Target:  5'- -cGCGGcCugCGCGacgaaGCGAcGGCGGUUg -3'
miRNA:   3'- caCGCC-GugGUGUg----CGUU-CCGCCAGu -5'
23940 5' -58.9 NC_005262.1 + 17264 0.67 0.468378
Target:  5'- -gGcCGGCGCCGCgcugggcugcuGCGCGGGcaggggcgucGCGGUCGg -3'
miRNA:   3'- caC-GCCGUGGUG-----------UGCGUUC----------CGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 48111 0.67 0.468378
Target:  5'- aUGUGacGCGCCGCGCGCAAGaGCucggcGUCGa -3'
miRNA:   3'- cACGC--CGUGGUGUGCGUUC-CGc----CAGU- -5'
23940 5' -58.9 NC_005262.1 + 49625 0.67 0.468378
Target:  5'- -aGCGGCuuGCCGCACuccucgGCGcGGCGGaCAa -3'
miRNA:   3'- caCGCCG--UGGUGUG------CGUuCCGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 50798 0.67 0.458623
Target:  5'- cUGCGcGUACacccacguCACGCGCGGGucGCGGUCGu -3'
miRNA:   3'- cACGC-CGUG--------GUGUGCGUUC--CGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 61656 0.67 0.458623
Target:  5'- aGUGCuGUACCGCgGCGCGcuggAGGCGuUCAa -3'
miRNA:   3'- -CACGcCGUGGUG-UGCGU----UCCGCcAGU- -5'
23940 5' -58.9 NC_005262.1 + 4698 0.67 0.458623
Target:  5'- -cGCGGCAuCCAgucguUGCGCAAGuGCGGg-- -3'
miRNA:   3'- caCGCCGU-GGU-----GUGCGUUC-CGCCagu -5'
23940 5' -58.9 NC_005262.1 + 50651 0.67 0.458623
Target:  5'- uGUGCcGCGCaGCGCGCGcGGCGGa-- -3'
miRNA:   3'- -CACGcCGUGgUGUGCGUuCCGCCagu -5'
23940 5' -58.9 NC_005262.1 + 44702 0.67 0.448978
Target:  5'- -cGUGGCaucGCCGCGCGCGAGGaaaugcagcuCGGcCGc -3'
miRNA:   3'- caCGCCG---UGGUGUGCGUUCC----------GCCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.