miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 11640 0.66 0.719226
Target:  5'- aUCGGcuCGGCGGCGcCGGCGuCGcGCUg -3'
miRNA:   3'- -GGCCu-GCUGCUGC-GCUGCuGCuCGGg -5'
23941 3' -58 NC_005262.1 + 19955 0.66 0.719226
Target:  5'- gCCGGccACcGCcGCGCG-CGGCcGGCCCg -3'
miRNA:   3'- -GGCC--UGcUGcUGCGCuGCUGcUCGGG- -5'
23941 3' -58 NC_005262.1 + 19269 0.66 0.719226
Target:  5'- -aGGAgguaGACGaucaGCGCGGCGAUcaggcuGGCCCa -3'
miRNA:   3'- ggCCUg---CUGC----UGCGCUGCUGc-----UCGGG- -5'
23941 3' -58 NC_005262.1 + 38575 0.66 0.719226
Target:  5'- uUCGGGCGGaaGgGCaGC-ACGAGCCCu -3'
miRNA:   3'- -GGCCUGCUgcUgCGcUGcUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 45013 0.66 0.719226
Target:  5'- gCGGACGccaAC-ACGCGGCagauGGCGAGCa- -3'
miRNA:   3'- gGCCUGC---UGcUGCGCUG----CUGCUCGgg -5'
23941 3' -58 NC_005262.1 + 5332 0.66 0.719226
Target:  5'- gCCGucCGACGuCGUGACGccGCGcacGCCUg -3'
miRNA:   3'- -GGCcuGCUGCuGCGCUGC--UGCu--CGGG- -5'
23941 3' -58 NC_005262.1 + 47126 0.66 0.7152
Target:  5'- aCCGGcuucaACGucaagcucaagguCGACGCGAcCGGCGAGgCg -3'
miRNA:   3'- -GGCC-----UGCu------------GCUGCGCU-GCUGCUCgGg -5'
23941 3' -58 NC_005262.1 + 33943 0.66 0.713184
Target:  5'- gCGGGCacGCGgcaagcgaucccggaACGCGGCGuCGAGCUg -3'
miRNA:   3'- gGCCUGc-UGC---------------UGCGCUGCuGCUCGGg -5'
23941 3' -58 NC_005262.1 + 522 0.66 0.709141
Target:  5'- gCCGGccgucaagcagGCGGCGGCuGCcACGAUGGcgccgaggauuGCCCa -3'
miRNA:   3'- -GGCC-----------UGCUGCUG-CGcUGCUGCU-----------CGGG- -5'
23941 3' -58 NC_005262.1 + 31880 0.66 0.709141
Target:  5'- gUGGuCGACGuccgGCGCGuCGAgCGGguuGCCCg -3'
miRNA:   3'- gGCCuGCUGC----UGCGCuGCU-GCU---CGGG- -5'
23941 3' -58 NC_005262.1 + 45875 0.66 0.709141
Target:  5'- gCCGuuGGCGuCGGCGcCGAuCGGCG-GCUCg -3'
miRNA:   3'- -GGC--CUGCuGCUGC-GCU-GCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 16080 0.66 0.709141
Target:  5'- uCCuGAUGACGAaccugaaCGGCG-CGGGCCUg -3'
miRNA:   3'- -GGcCUGCUGCUgc-----GCUGCuGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 5880 0.66 0.709141
Target:  5'- gCGGAUGAagcgauCGACGuCGAUGuCGGGCg- -3'
miRNA:   3'- gGCCUGCU------GCUGC-GCUGCuGCUCGgg -5'
23941 3' -58 NC_005262.1 + 17758 0.66 0.709141
Target:  5'- gCGGACGAC-ACGCugcuCGAauuCGAGgCCg -3'
miRNA:   3'- gGCCUGCUGcUGCGcu--GCU---GCUCgGG- -5'
23941 3' -58 NC_005262.1 + 49681 0.66 0.708129
Target:  5'- aUGGuCGGCGGCGCGcgcaaccugaaccGCGACG-GCg- -3'
miRNA:   3'- gGCCuGCUGCUGCGC-------------UGCUGCuCGgg -5'
23941 3' -58 NC_005262.1 + 30708 0.66 0.706102
Target:  5'- aCGGAUGGaaagacccucccgcCGugGCGAgaggguCGA-GGGCCCg -3'
miRNA:   3'- gGCCUGCU--------------GCugCGCU------GCUgCUCGGG- -5'
23941 3' -58 NC_005262.1 + 10197 0.66 0.69899
Target:  5'- gCCGaGCGGCGACGCGGuuGCGAacaUCCg -3'
miRNA:   3'- -GGCcUGCUGCUGCGCUgcUGCUc--GGG- -5'
23941 3' -58 NC_005262.1 + 56765 0.66 0.69899
Target:  5'- gUCGGGCGACGAgCGCuacauGAagcUGGCcGGCCUg -3'
miRNA:   3'- -GGCCUGCUGCU-GCG-----CU---GCUGcUCGGG- -5'
23941 3' -58 NC_005262.1 + 12592 0.66 0.69899
Target:  5'- gCCGGcgaGGCGuCGCgGAUGAgCGcGCCCu -3'
miRNA:   3'- -GGCCug-CUGCuGCG-CUGCU-GCuCGGG- -5'
23941 3' -58 NC_005262.1 + 28688 0.66 0.69899
Target:  5'- aUGGAgGAaGGCGCGGucgacgauauCGACGAGUUCc -3'
miRNA:   3'- gGCCUgCUgCUGCGCU----------GCUGCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.