Results 1 - 20 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23941 | 3' | -58 | NC_005262.1 | + | 28688 | 0.66 | 0.69899 |
Target: 5'- aUGGAgGAaGGCGCGGucgacgauauCGACGAGUUCc -3' miRNA: 3'- gGCCUgCUgCUGCGCU----------GCUGCUCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 12592 | 0.66 | 0.69899 |
Target: 5'- gCCGGcgaGGCGuCGCgGAUGAgCGcGCCCu -3' miRNA: 3'- -GGCCug-CUGCuGCG-CUGCU-GCuCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 47285 | 0.66 | 0.668227 |
Target: 5'- aCGGACGccGCGGCGaaGAuCGGCGAGgCa -3' miRNA: 3'- gGCCUGC--UGCUGCg-CU-GCUGCUCgGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 4400 | 0.66 | 0.668227 |
Target: 5'- aCGGAUGAUGACG-GGCGGuCGucGGCUUc -3' miRNA: 3'- gGCCUGCUGCUGCgCUGCU-GC--UCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 58652 | 0.66 | 0.677495 |
Target: 5'- gCCGGGCGcGCGA-GUucuACGAucaagccCGAGCCCg -3' miRNA: 3'- -GGCCUGC-UGCUgCGc--UGCU-------GCUCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 2752 | 0.66 | 0.68878 |
Target: 5'- cCCGGAUG-CGcuucaGCaCGGCGGCGGGUgCCg -3' miRNA: 3'- -GGCCUGCuGC-----UGcGCUGCUGCUCG-GG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 16798 | 0.66 | 0.685708 |
Target: 5'- nCGGACGGCGAgcucauggaguuccUGC-ACGAC-AGCCg -3' miRNA: 3'- gGCCUGCUGCU--------------GCGcUGCUGcUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 53905 | 0.66 | 0.677495 |
Target: 5'- gUGGACGggucugcGCGACGCGcugaaGCaGGCGcAGCUCg -3' miRNA: 3'- gGCCUGC-------UGCUGCGC-----UG-CUGC-UCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 10197 | 0.66 | 0.69899 |
Target: 5'- gCCGaGCGGCGACGCGGuuGCGAacaUCCg -3' miRNA: 3'- -GGCcUGCUGCUGCGCUgcUGCUc--GGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 12553 | 0.66 | 0.668227 |
Target: 5'- gCGGcaggucGCGGCGGCGCu-CGuCGAGCUg -3' miRNA: 3'- gGCC------UGCUGCUGCGcuGCuGCUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 6691 | 0.66 | 0.667195 |
Target: 5'- aCUGGAgccCGuCGACGUucuucacuuccauGAUGcCGGGCCCg -3' miRNA: 3'- -GGCCU---GCuGCUGCG-------------CUGCuGCUCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 48883 | 0.66 | 0.68878 |
Target: 5'- aCUGucCGACGuCGUGACcGCaaGGGCCCg -3' miRNA: 3'- -GGCcuGCUGCuGCGCUGcUG--CUCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 28874 | 0.66 | 0.667195 |
Target: 5'- aCGGACGAgaugcuggGACGC-ACGACGAacgcaguGUCCg -3' miRNA: 3'- gGCCUGCUg-------CUGCGcUGCUGCU-------CGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 56765 | 0.66 | 0.69899 |
Target: 5'- gUCGGGCGACGAgCGCuacauGAagcUGGCcGGCCUg -3' miRNA: 3'- -GGCCUGCUGCU-GCG-----CU---GCUGcUCGGG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 50344 | 0.66 | 0.68878 |
Target: 5'- -aGGACGaaGCGccCGCGACGaccGCGAGCg- -3' miRNA: 3'- ggCCUGC--UGCu-GCGCUGC---UGCUCGgg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 49681 | 0.66 | 0.708129 |
Target: 5'- aUGGuCGGCGGCGCGcgcaaccugaaccGCGACG-GCg- -3' miRNA: 3'- gGCCuGCUGCUGCGC-------------UGCUGCuCGgg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 36285 | 0.66 | 0.68878 |
Target: 5'- gCGcGCGGCGACGCGAacaccucgguCGACuucggugggGGGCCg -3' miRNA: 3'- gGCcUGCUGCUGCGCU----------GCUG---------CUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 8195 | 0.66 | 0.678523 |
Target: 5'- gCCGGAaGGCGccGCaGCGAUGauccgcGCGGGCCa -3' miRNA: 3'- -GGCCUgCUGC--UG-CGCUGC------UGCUCGGg -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 4849 | 0.66 | 0.68878 |
Target: 5'- uCCGGugGAuucgcuUGuCGCGGCGcagcuugcCGAGCgCCg -3' miRNA: 3'- -GGCCugCU------GCuGCGCUGCu-------GCUCG-GG- -5' |
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23941 | 3' | -58 | NC_005262.1 | + | 46155 | 0.66 | 0.668227 |
Target: 5'- gCGGcgccucaacGCGAucucCGACGCGACGGcCGAGgCg -3' miRNA: 3'- gGCC---------UGCU----GCUGCGCUGCU-GCUCgGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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