miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 6691 0.66 0.667195
Target:  5'- aCUGGAgccCGuCGACGUucuucacuuccauGAUGcCGGGCCCg -3'
miRNA:   3'- -GGCCU---GCuGCUGCG-------------CUGCuGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 53905 0.66 0.677495
Target:  5'- gUGGACGggucugcGCGACGCGcugaaGCaGGCGcAGCUCg -3'
miRNA:   3'- gGCCUGC-------UGCUGCGC-----UG-CUGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 54013 0.66 0.668227
Target:  5'- --cGACGACGAgGCGAUGcugcCGAaCCCa -3'
miRNA:   3'- ggcCUGCUGCUgCGCUGCu---GCUcGGG- -5'
23941 3' -58 NC_005262.1 + 34497 0.66 0.668227
Target:  5'- uCUGGcCGuucACGGCGCGgauGCGcuucACGAGCUCg -3'
miRNA:   3'- -GGCCuGC---UGCUGCGC---UGC----UGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 46155 0.66 0.668227
Target:  5'- gCGGcgccucaacGCGAucucCGACGCGACGGcCGAGgCg -3'
miRNA:   3'- gGCC---------UGCU----GCUGCGCUGCU-GCUCgGg -5'
23941 3' -58 NC_005262.1 + 47285 0.66 0.668227
Target:  5'- aCGGACGccGCGGCGaaGAuCGGCGAGgCa -3'
miRNA:   3'- gGCCUGC--UGCUGCg-CU-GCUGCUCgGg -5'
23941 3' -58 NC_005262.1 + 12553 0.66 0.668227
Target:  5'- gCGGcaggucGCGGCGGCGCu-CGuCGAGCUg -3'
miRNA:   3'- gGCC------UGCUGCUGCGcuGCuGCUCGGg -5'
23941 3' -58 NC_005262.1 + 17480 0.67 0.610257
Target:  5'- uCCaGGACGaagcgcgcgccgcgcGCGACGCGuCGAuCGgcAGCCUg -3'
miRNA:   3'- -GG-CCUGC---------------UGCUGCGCuGCU-GC--UCGGG- -5'
23941 3' -58 NC_005262.1 + 53046 0.67 0.616468
Target:  5'- aCGGGCGuggaguACGACGCGcUGACcGGCgCg -3'
miRNA:   3'- gGCCUGC------UGCUGCGCuGCUGcUCGgG- -5'
23941 3' -58 NC_005262.1 + 60601 0.67 0.626828
Target:  5'- cCCGGcgauacagggcACGGCGAacgccaUGCGcacgcuggcgaGCGGCGAGCaCCg -3'
miRNA:   3'- -GGCC-----------UGCUGCU------GCGC-----------UGCUGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 30825 0.67 0.60612
Target:  5'- cCCGGugcgcgucuCGGCGACGCGcaucguCGACGucgggaugacGGCCg -3'
miRNA:   3'- -GGCCu--------GCUGCUGCGCu-----GCUGC----------UCGGg -5'
23941 3' -58 NC_005262.1 + 23713 0.67 0.616468
Target:  5'- aCGGuCGACcACGCGGCGAUca-CCCu -3'
miRNA:   3'- gGCCuGCUGcUGCGCUGCUGcucGGG- -5'
23941 3' -58 NC_005262.1 + 53842 0.67 0.647552
Target:  5'- aCCGG-CG-CGGCGCGgACGGCaAGCa- -3'
miRNA:   3'- -GGCCuGCuGCUGCGC-UGCUGcUCGgg -5'
23941 3' -58 NC_005262.1 + 27561 0.67 0.6579
Target:  5'- cCCGG-CGAgGACGCcGCGcagcGCGAgaaGCCUg -3'
miRNA:   3'- -GGCCuGCUgCUGCGcUGC----UGCU---CGGG- -5'
23941 3' -58 NC_005262.1 + 36844 0.67 0.616468
Target:  5'- aUGGugcCGACGACaCGACGGCG-GUUCa -3'
miRNA:   3'- gGCCu--GCUGCUGcGCUGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 48043 0.67 0.629937
Target:  5'- gCCGGcCG-CGcccgcaaGCGCGucggucgcaccugccGCGACGAGCCg -3'
miRNA:   3'- -GGCCuGCuGC-------UGCGC---------------UGCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 28402 0.67 0.616468
Target:  5'- cCCGaACGACGA-GCGGC-ACGuGCUCg -3'
miRNA:   3'- -GGCcUGCUGCUgCGCUGcUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 59724 0.67 0.60612
Target:  5'- gCCGGcaagguguacaACGugGugGaUGGCGGCG-GCCa -3'
miRNA:   3'- -GGCC-----------UGCugCugC-GCUGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 44341 0.67 0.60612
Target:  5'- uCUGGugcccgcaaagaACGuCGACGCGcugaaguuCGACGAGCaCCu -3'
miRNA:   3'- -GGCC------------UGCuGCUGCGCu-------GCUGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 2255 0.67 0.616468
Target:  5'- cUCGGGCcGCGu--CGAUGACG-GCCCg -3'
miRNA:   3'- -GGCCUGcUGCugcGCUGCUGCuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.