miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 49223 0.67 0.60612
Target:  5'- gCGGccuCGGCGGCGCGcaguccGCGcGCGAGgUCCg -3'
miRNA:   3'- gGCCu--GCUGCUGCGC------UGC-UGCUC-GGG- -5'
23941 3' -58 NC_005262.1 + 30160 0.67 0.605086
Target:  5'- gCGGAUGcCGACGCGAagcugaaggagauCGGCGAGa-- -3'
miRNA:   3'- gGCCUGCuGCUGCGCU-------------GCUGCUCggg -5'
23941 3' -58 NC_005262.1 + 50845 0.67 0.637192
Target:  5'- gCCGGuCGGCGAUGCcGuCG-CGcacGCCCu -3'
miRNA:   3'- -GGCCuGCUGCUGCG-CuGCuGCu--CGGG- -5'
23941 3' -58 NC_005262.1 + 50754 0.67 0.637192
Target:  5'- aUCGGcCGcagcuCGACGCGcACcGCGuAGCCCu -3'
miRNA:   3'- -GGCCuGCu----GCUGCGC-UGcUGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 47437 0.67 0.647552
Target:  5'- gCCGaacGCGGCGGCGCcgaucagcGCGcCGAGCCa -3'
miRNA:   3'- -GGCc--UGCUGCUGCGc-------UGCuGCUCGGg -5'
23941 3' -58 NC_005262.1 + 1691 0.67 0.647552
Target:  5'- uCCGcGACG-CGGuugcCGCGGCGGCGAcGCa- -3'
miRNA:   3'- -GGC-CUGCuGCU----GCGCUGCUGCU-CGgg -5'
23941 3' -58 NC_005262.1 + 18557 0.67 0.6579
Target:  5'- gCCGGuCGcCGAguUGcCGGCGuucaggcCGAGCCCg -3'
miRNA:   3'- -GGCCuGCuGCU--GC-GCUGCu------GCUCGGG- -5'
23941 3' -58 NC_005262.1 + 52305 0.67 0.647552
Target:  5'- gCCGagcuCGGCGACGCGgcccaugugcucGCGcGCGAGCgCg -3'
miRNA:   3'- -GGCcu--GCUGCUGCGC------------UGC-UGCUCGgG- -5'
23941 3' -58 NC_005262.1 + 51815 0.67 0.60612
Target:  5'- cUCGG-CGACGacuucaGCGCGGcCGACGuGCgCg -3'
miRNA:   3'- -GGCCuGCUGC------UGCGCU-GCUGCuCGgG- -5'
23941 3' -58 NC_005262.1 + 59724 0.67 0.60612
Target:  5'- gCCGGcaagguguacaACGugGugGaUGGCGGCG-GCCa -3'
miRNA:   3'- -GGCC-----------UGCugCugC-GCUGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 61462 0.67 0.60612
Target:  5'- gCGGACGGCGAaGCGcuaGACGAcaucuucgcgcgGCCg -3'
miRNA:   3'- gGCCUGCUGCUgCGCug-CUGCU------------CGGg -5'
23941 3' -58 NC_005262.1 + 36844 0.67 0.616468
Target:  5'- aUGGugcCGACGACaCGACGGCG-GUUCa -3'
miRNA:   3'- gGCCu--GCUGCUGcGCUGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 28402 0.67 0.616468
Target:  5'- cCCGaACGACGA-GCGGC-ACGuGCUCg -3'
miRNA:   3'- -GGCcUGCUGCUgCGCUGcUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 23713 0.67 0.616468
Target:  5'- aCGGuCGACcACGCGGCGAUca-CCCu -3'
miRNA:   3'- gGCCuGCUGcUGCGCUGCUGcucGGG- -5'
23941 3' -58 NC_005262.1 + 6549 0.67 0.616468
Target:  5'- aCGGGCuuCGGCGUGuugccgcCGACGAGCg- -3'
miRNA:   3'- gGCCUGcuGCUGCGCu------GCUGCUCGgg -5'
23941 3' -58 NC_005262.1 + 2255 0.67 0.616468
Target:  5'- cUCGGGCcGCGu--CGAUGACG-GCCCg -3'
miRNA:   3'- -GGCCUGcUGCugcGCUGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 17480 0.67 0.610257
Target:  5'- uCCaGGACGaagcgcgcgccgcgcGCGACGCGuCGAuCGgcAGCCUg -3'
miRNA:   3'- -GG-CCUGC---------------UGCUGCGCuGCU-GC--UCGGG- -5'
23941 3' -58 NC_005262.1 + 44341 0.67 0.60612
Target:  5'- uCUGGugcccgcaaagaACGuCGACGCGcugaaguuCGACGAGCaCCu -3'
miRNA:   3'- -GGCC------------UGCuGCUGCGCu-------GCUGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 30825 0.67 0.60612
Target:  5'- cCCGGugcgcgucuCGGCGACGCGcaucguCGACGucgggaugacGGCCg -3'
miRNA:   3'- -GGCCu--------GCUGCUGCGCu-----GCUGC----------UCGGg -5'
23941 3' -58 NC_005262.1 + 30417 0.67 0.637192
Target:  5'- gCUGGGCGGCGuCGaCGAUcACG-GCCg -3'
miRNA:   3'- -GGCCUGCUGCuGC-GCUGcUGCuCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.