miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 20880 1.14 0.00049
Target:  5'- gCCGGACGACGACGCGACGACGAGCCCa -3'
miRNA:   3'- -GGCCUGCUGCUGCGCUGCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 44149 0.86 0.043953
Target:  5'- gCCGGACGcGCGcgcgaucgggcaggaGCGCGGCGGCGAGCUCa -3'
miRNA:   3'- -GGCCUGC-UGC---------------UGCGCUGCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 46763 0.82 0.083683
Target:  5'- gCCGGucguacagGCGGCGACGCGcgguaucaacgGCGGCGAGCCg -3'
miRNA:   3'- -GGCC--------UGCUGCUGCGC-----------UGCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 21627 0.82 0.085969
Target:  5'- cCCGGaguGCGACGGCGaCGGCGACG-GCCa -3'
miRNA:   3'- -GGCC---UGCUGCUGC-GCUGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 5071 0.81 0.093186
Target:  5'- cCCGcGGCGGCGGCGCGuGCGACcGGCUCg -3'
miRNA:   3'- -GGC-CUGCUGCUGCGC-UGCUGcUCGGG- -5'
23941 3' -58 NC_005262.1 + 23354 0.8 0.11232
Target:  5'- aCGGcCGGCGugaagcGCGCGGCGGCGAagGCCCg -3'
miRNA:   3'- gGCCuGCUGC------UGCGCUGCUGCU--CGGG- -5'
23941 3' -58 NC_005262.1 + 16060 0.8 0.115336
Target:  5'- gCGGcCGGCGGCGCaccagauacaGGCGGCGAGCCg -3'
miRNA:   3'- gGCCuGCUGCUGCG----------CUGCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 22614 0.78 0.146079
Target:  5'- gCCGGGCG-CGcACGCGaucGCGGCGGuGCCCu -3'
miRNA:   3'- -GGCCUGCuGC-UGCGC---UGCUGCU-CGGG- -5'
23941 3' -58 NC_005262.1 + 30030 0.78 0.146079
Target:  5'- gUCGGACGACGACGCaGCaGCGGGCa- -3'
miRNA:   3'- -GGCCUGCUGCUGCGcUGcUGCUCGgg -5'
23941 3' -58 NC_005262.1 + 31370 0.78 0.15386
Target:  5'- gCCGG-CGAUGAaaccggcaGCGAUGGCGGGCUCg -3'
miRNA:   3'- -GGCCuGCUGCUg-------CGCUGCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 34003 0.78 0.162015
Target:  5'- aUGGGCgcgGACGGCGUGACGcCGGGCCg -3'
miRNA:   3'- gGCCUG---CUGCUGCGCUGCuGCUCGGg -5'
23941 3' -58 NC_005262.1 + 41566 0.77 0.17364
Target:  5'- gCCGgcGugGGCGGCGCGGcCGugagcuugucgagcGCGAGCCCg -3'
miRNA:   3'- -GGC--CugCUGCUGCGCU-GC--------------UGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 48485 0.77 0.179499
Target:  5'- gUGGGCacgGGCGGCGCGACGGC-AGCCg -3'
miRNA:   3'- gGCCUG---CUGCUGCGCUGCUGcUCGGg -5'
23941 3' -58 NC_005262.1 + 25194 0.77 0.179499
Target:  5'- -aGGGCGACGACcaggaCGACGACGAagggcucgugcuGCCCu -3'
miRNA:   3'- ggCCUGCUGCUGc----GCUGCUGCU------------CGGG- -5'
23941 3' -58 NC_005262.1 + 30070 0.76 0.198636
Target:  5'- gCCGGcgACGACGACGCcggcaagaagGGCGACGAcacGCCg -3'
miRNA:   3'- -GGCC--UGCUGCUGCG----------CUGCUGCU---CGGg -5'
23941 3' -58 NC_005262.1 + 17340 0.76 0.203691
Target:  5'- gCCGGcGCGGCauucggguccGGCGCGggcggcGCGGCGGGCCCc -3'
miRNA:   3'- -GGCC-UGCUG----------CUGCGC------UGCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 13363 0.76 0.214135
Target:  5'- gCGGcACGACGACGUGcACG-CG-GCCCu -3'
miRNA:   3'- gGCC-UGCUGCUGCGC-UGCuGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 57148 0.76 0.214135
Target:  5'- -aGGACGGCGACGCGAuCGA--AGCgCCg -3'
miRNA:   3'- ggCCUGCUGCUGCGCU-GCUgcUCG-GG- -5'
23941 3' -58 NC_005262.1 + 42754 0.75 0.22448
Target:  5'- aCGGcACGACGAucgugguCGCGACGgACGgccAGCCCu -3'
miRNA:   3'- gGCC-UGCUGCU-------GCGCUGC-UGC---UCGGG- -5'
23941 3' -58 NC_005262.1 + 9362 0.75 0.225036
Target:  5'- uCCGGuCGGCGcGCGCGGCGgccugcgccuccGCGAGCUUg -3'
miRNA:   3'- -GGCCuGCUGC-UGCGCUGC------------UGCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.