miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 6773 0.75 0.230093
Target:  5'- gCCGGGC-ACGAUGCcgauGAucuugaagucgaaCGACGAGCCCa -3'
miRNA:   3'- -GGCCUGcUGCUGCG----CU-------------GCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 50386 0.75 0.230661
Target:  5'- aCCGuGGCGACGcgaaccGCGCGGCGAUcAGCgCCg -3'
miRNA:   3'- -GGC-CUGCUGC------UGCGCUGCUGcUCG-GG- -5'
23941 3' -58 NC_005262.1 + 29952 0.75 0.230661
Target:  5'- cCCGGACG-CGG-GCGGCGGCGAagguGCCa -3'
miRNA:   3'- -GGCCUGCuGCUgCGCUGCUGCU----CGGg -5'
23941 3' -58 NC_005262.1 + 33180 0.75 0.232944
Target:  5'- gCCGGGCaaGAccuaccacuuugcgcCGACGCagGACGACGAGCgCCa -3'
miRNA:   3'- -GGCCUG--CU---------------GCUGCG--CUGCUGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 28227 0.75 0.236404
Target:  5'- aCGG-CGAUGACGCGAUGGauucGCCCg -3'
miRNA:   3'- gGCCuGCUGCUGCGCUGCUgcu-CGGG- -5'
23941 3' -58 NC_005262.1 + 52392 0.75 0.236404
Target:  5'- cCCGG-CG-CGGCGCGgcuucgGCGugGAGCCg -3'
miRNA:   3'- -GGCCuGCuGCUGCGC------UGCugCUCGGg -5'
23941 3' -58 NC_005262.1 + 49908 0.75 0.238734
Target:  5'- gUCGG-CGACGACGggcagcaguaccgccUGACGACcGGCCCg -3'
miRNA:   3'- -GGCCuGCUGCUGC---------------GCUGCUGcUCGGG- -5'
23941 3' -58 NC_005262.1 + 59309 0.75 0.242266
Target:  5'- gCCGGACGGCGGCucggGCauGACGACG-GCUg -3'
miRNA:   3'- -GGCCUGCUGCUG----CG--CUGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 43692 0.75 0.242266
Target:  5'- gCCGGGcCGAauucGCGCGGCGACGcGCUCa -3'
miRNA:   3'- -GGCCU-GCUgc--UGCGCUGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 51180 0.75 0.248249
Target:  5'- -aGGcagcCGACGACGCGGCGGCccgcugGAGCCg -3'
miRNA:   3'- ggCCu---GCUGCUGCGCUGCUG------CUCGGg -5'
23941 3' -58 NC_005262.1 + 46727 0.75 0.25251
Target:  5'- aCGGGCG-CGccuaucggcgccguGCGCG-CGACGAGCUCg -3'
miRNA:   3'- gGCCUGCuGC--------------UGCGCuGCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 14002 0.75 0.254354
Target:  5'- gCCGGACGGugcaggggcgucCGGCGCGgcaGCGGCcgGAGCCUc -3'
miRNA:   3'- -GGCCUGCU------------GCUGCGC---UGCUG--CUCGGG- -5'
23941 3' -58 NC_005262.1 + 62125 0.75 0.254354
Target:  5'- gCGGAUGaACGACGacuuugaGGCGAUG-GCCCg -3'
miRNA:   3'- gGCCUGC-UGCUGCg------CUGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 27868 0.74 0.266932
Target:  5'- -aGGACGGCGGCaaGGCGGcCGAGCgCa -3'
miRNA:   3'- ggCCUGCUGCUGcgCUGCU-GCUCGgG- -5'
23941 3' -58 NC_005262.1 + 31926 0.74 0.271452
Target:  5'- gCCGGACGucgccaccugcuguACGGCgguGUGGCGACGAGCa- -3'
miRNA:   3'- -GGCCUGC--------------UGCUG---CGCUGCUGCUCGgg -5'
23941 3' -58 NC_005262.1 + 7523 0.74 0.280009
Target:  5'- aUCGGGCagguucGGCGGCGCGuCGGCGcGCUCg -3'
miRNA:   3'- -GGCCUG------CUGCUGCGCuGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 62685 0.74 0.280009
Target:  5'- cCCGG-CGGCGgcaggggaGCGCGACGAUGGGUa- -3'
miRNA:   3'- -GGCCuGCUGC--------UGCGCUGCUGCUCGgg -5'
23941 3' -58 NC_005262.1 + 33525 0.74 0.280009
Target:  5'- cCUGGACGACGAgGCGAUcGCGA-CCa -3'
miRNA:   3'- -GGCCUGCUGCUgCGCUGcUGCUcGGg -5'
23941 3' -58 NC_005262.1 + 60835 0.74 0.280009
Target:  5'- gCCGGccuacGCGAuCGGCGUGGCGAUG-GCCg -3'
miRNA:   3'- -GGCC-----UGCU-GCUGCGCUGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 27956 0.74 0.286736
Target:  5'- uCUGGGCGgucGCGGCGcCGACGcCGcuccGGCCCa -3'
miRNA:   3'- -GGCCUGC---UGCUGC-GCUGCuGC----UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.