miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 27956 0.74 0.286736
Target:  5'- uCUGGGCGgucGCGGCGcCGACGcCGcuccGGCCCa -3'
miRNA:   3'- -GGCCUGC---UGCUGC-GCUGCuGC----UCGGG- -5'
23941 3' -58 NC_005262.1 + 62208 0.74 0.289462
Target:  5'- cCCGGACGA--ACGCGACGaAaucuugcacucgauuCGAGCCUa -3'
miRNA:   3'- -GGCCUGCUgcUGCGCUGC-U---------------GCUCGGG- -5'
23941 3' -58 NC_005262.1 + 49719 0.73 0.29359
Target:  5'- gCCGGGCGGCGAacCGGCGGcCGaAGCCg -3'
miRNA:   3'- -GGCCUGCUGCUgcGCUGCU-GC-UCGGg -5'
23941 3' -58 NC_005262.1 + 37437 0.73 0.307679
Target:  5'- aUCGcGuCGACaACGCGAUGAUGGGCCg -3'
miRNA:   3'- -GGC-CuGCUGcUGCGCUGCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 14456 0.73 0.307679
Target:  5'- cCCGGACGGCuacaccGAUGUcccguaucACGGCGAGCCUg -3'
miRNA:   3'- -GGCCUGCUG------CUGCGc-------UGCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 16583 0.73 0.307679
Target:  5'- uCUGcGGCGGCGACaGUGcCG-CGAGCCCc -3'
miRNA:   3'- -GGC-CUGCUGCUG-CGCuGCuGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 7881 0.73 0.314915
Target:  5'- gCCGGACGGuCGACGUacuGCG-CGAGCUg -3'
miRNA:   3'- -GGCCUGCU-GCUGCGc--UGCuGCUCGGg -5'
23941 3' -58 NC_005262.1 + 28005 0.73 0.314915
Target:  5'- -aGGACGA-GAa-CGACGGCGAGCCg -3'
miRNA:   3'- ggCCUGCUgCUgcGCUGCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 34970 0.73 0.314915
Target:  5'- uCUGGAuCGA--GCGCGACG-CGAGCUCg -3'
miRNA:   3'- -GGCCU-GCUgcUGCGCUGCuGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 17697 0.73 0.314915
Target:  5'- gCCGGcCGugGuCGCuGGCccgaACGAGCCCg -3'
miRNA:   3'- -GGCCuGCugCuGCG-CUGc---UGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 23406 0.73 0.314915
Target:  5'- --aGGCGGCGAUGCGGCGGgcagcaUGAGCCg -3'
miRNA:   3'- ggcCUGCUGCUGCGCUGCU------GCUCGGg -5'
23941 3' -58 NC_005262.1 + 7625 0.73 0.320796
Target:  5'- aCCGGACGuuggccgaauguCGACGcCGGCGGCGAcgGCUa -3'
miRNA:   3'- -GGCCUGCu-----------GCUGC-GCUGCUGCU--CGGg -5'
23941 3' -58 NC_005262.1 + 22125 0.73 0.322279
Target:  5'- gCCGGugcCGGCGGCGaUGACGGCGccGCCg -3'
miRNA:   3'- -GGCCu--GCUGCUGC-GCUGCUGCu-CGGg -5'
23941 3' -58 NC_005262.1 + 50295 0.73 0.322279
Target:  5'- cCCGuGACGGCcGCGCGGauUGAgGAGCCg -3'
miRNA:   3'- -GGC-CUGCUGcUGCGCU--GCUgCUCGGg -5'
23941 3' -58 NC_005262.1 + 10461 0.73 0.329771
Target:  5'- gCCGGgcggaagccGCGACGACaGCGGCGACcAGCa- -3'
miRNA:   3'- -GGCC---------UGCUGCUG-CGCUGCUGcUCGgg -5'
23941 3' -58 NC_005262.1 + 57479 0.73 0.329771
Target:  5'- gCGGGCGcCGACgagagGCGGcCGGCGAGCgCa -3'
miRNA:   3'- gGCCUGCuGCUG-----CGCU-GCUGCUCGgG- -5'
23941 3' -58 NC_005262.1 + 47068 0.72 0.337391
Target:  5'- --cGACGACGGCGUGACGccCGuGUCCa -3'
miRNA:   3'- ggcCUGCUGCUGCGCUGCu-GCuCGGG- -5'
23941 3' -58 NC_005262.1 + 63523 0.72 0.337391
Target:  5'- gCCGGAgccgcgaGACGAgGUGACGGaugaacgacCGAGCCUg -3'
miRNA:   3'- -GGCCUg------CUGCUgCGCUGCU---------GCUCGGG- -5'
23941 3' -58 NC_005262.1 + 38967 0.72 0.337391
Target:  5'- aUCGGcACGGCGccggcCGCGAUcGCGAGCUCg -3'
miRNA:   3'- -GGCC-UGCUGCu----GCGCUGcUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 51861 0.72 0.345138
Target:  5'- gCGGcgccGCGaACGACGCGAgcaCGAcCGAGCCg -3'
miRNA:   3'- gGCC----UGC-UGCUGCGCU---GCU-GCUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.