miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 37927 0.72 0.361011
Target:  5'- gUGGACGAuUGGCGCGcauggaccGCGACGccaacGCCCg -3'
miRNA:   3'- gGCCUGCU-GCUGCGC--------UGCUGCu----CGGG- -5'
23941 3' -58 NC_005262.1 + 12915 0.72 0.361011
Target:  5'- gCUGGACGACGACaaccuGCG-CGGCGcGCUg -3'
miRNA:   3'- -GGCCUGCUGCUG-----CGCuGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 43438 0.72 0.368319
Target:  5'- uCCGaucGACGGCGACGCGcuuguGCGGaucgaguCGAGCCg -3'
miRNA:   3'- -GGC---CUGCUGCUGCGC-----UGCU-------GCUCGGg -5'
23941 3' -58 NC_005262.1 + 6459 0.72 0.368319
Target:  5'- uCCGG-CGA-GACGCcggcaucGACG-CGGGCCCa -3'
miRNA:   3'- -GGCCuGCUgCUGCG-------CUGCuGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 57217 0.72 0.369137
Target:  5'- gCCGGuCGGCGGCaucGCGACG-CGcGCCg -3'
miRNA:   3'- -GGCCuGCUGCUG---CGCUGCuGCuCGGg -5'
23941 3' -58 NC_005262.1 + 25612 0.72 0.369137
Target:  5'- cCCGGACaaGGCGGCcgaaGUGGUGACGGGCuCCa -3'
miRNA:   3'- -GGCCUG--CUGCUG----CGCUGCUGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 12263 0.72 0.369137
Target:  5'- gUCGGGCaccuguCGAuCGCGGcCGGCGAGCCg -3'
miRNA:   3'- -GGCCUGcu----GCU-GCGCU-GCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 52105 0.72 0.369137
Target:  5'- aCGGACGACcucgGCGACGcCGugaAGCCCu -3'
miRNA:   3'- gGCCUGCUGcug-CGCUGCuGC---UCGGG- -5'
23941 3' -58 NC_005262.1 + 35832 0.72 0.369137
Target:  5'- gCCGGA--GCGGCGuCGGCGccGCGAccGCCCa -3'
miRNA:   3'- -GGCCUgcUGCUGC-GCUGC--UGCU--CGGG- -5'
23941 3' -58 NC_005262.1 + 42267 0.72 0.377387
Target:  5'- aCUGcGGCGACGA-GCGGC-ACGGGCaCCg -3'
miRNA:   3'- -GGC-CUGCUGCUgCGCUGcUGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 51422 0.72 0.377387
Target:  5'- cUCGG-CGGCGcGCGCGAgGGCGAuaCCg -3'
miRNA:   3'- -GGCCuGCUGC-UGCGCUgCUGCUcgGG- -5'
23941 3' -58 NC_005262.1 + 16758 0.72 0.380721
Target:  5'- gUGGGCGcagccaugcgauuucGCGAuCGCGAUGAUcAGCCCg -3'
miRNA:   3'- gGCCUGC---------------UGCU-GCGCUGCUGcUCGGG- -5'
23941 3' -58 NC_005262.1 + 25688 0.71 0.38576
Target:  5'- aCGGcCGAgGGcCGCGAgGGCGAGUUCu -3'
miRNA:   3'- gGCCuGCUgCU-GCGCUgCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 48434 0.71 0.389143
Target:  5'- aCGGACGGCGgcaugaccACGCGcGCGuaugccgcgcggaucGCGAGCCg -3'
miRNA:   3'- gGCCUGCUGC--------UGCGC-UGC---------------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 43811 0.71 0.394255
Target:  5'- uUCGGGCGAU--CGCGGCGacacggccGCGGGCCg -3'
miRNA:   3'- -GGCCUGCUGcuGCGCUGC--------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 45776 0.71 0.394255
Target:  5'- aUCGGcaucGCGGCGAaggGCGGCGGCGuGCUg -3'
miRNA:   3'- -GGCC----UGCUGCUg--CGCUGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 39937 0.71 0.394255
Target:  5'- aCCGGACgGGCGGCaccgGCaagGGCGGCGuGCCg -3'
miRNA:   3'- -GGCCUG-CUGCUG----CG---CUGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 27780 0.71 0.402869
Target:  5'- gCGGcACGAUGAUGCGACGGCacucGCgCg -3'
miRNA:   3'- gGCC-UGCUGCUGCGCUGCUGcu--CGgG- -5'
23941 3' -58 NC_005262.1 + 61115 0.71 0.402869
Target:  5'- aCCGGGCGACGAaggggacgGUGuACGACGcGCUg -3'
miRNA:   3'- -GGCCUGCUGCUg-------CGC-UGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 8896 0.71 0.408971
Target:  5'- aCCGcACGACGguccgcucuuggguGCGCGGCGAaaaGcGCCCg -3'
miRNA:   3'- -GGCcUGCUGC--------------UGCGCUGCUg--CuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.