miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 51223 0.66 0.69899
Target:  5'- gCCGG-CGGCaGCaGCagcuCGACGAGCgCCg -3'
miRNA:   3'- -GGCCuGCUGcUG-CGcu--GCUGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 28688 0.66 0.69899
Target:  5'- aUGGAgGAaGGCGCGGucgacgauauCGACGAGUUCc -3'
miRNA:   3'- gGCCUgCUgCUGCGCU----------GCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 12592 0.66 0.69899
Target:  5'- gCCGGcgaGGCGuCGCgGAUGAgCGcGCCCu -3'
miRNA:   3'- -GGCCug-CUGCuGCG-CUGCU-GCuCGGG- -5'
23941 3' -58 NC_005262.1 + 10197 0.66 0.69899
Target:  5'- gCCGaGCGGCGACGCGGuuGCGAacaUCCg -3'
miRNA:   3'- -GGCcUGCUGCUGCGCUgcUGCUc--GGG- -5'
23941 3' -58 NC_005262.1 + 56765 0.66 0.69899
Target:  5'- gUCGGGCGACGAgCGCuacauGAagcUGGCcGGCCUg -3'
miRNA:   3'- -GGCCUGCUGCU-GCG-----CU---GCUGcUCGGG- -5'
23941 3' -58 NC_005262.1 + 57042 0.66 0.69287
Target:  5'- cCCGGccacgagcacaACGA-GGCGCG-CGAgauguucgacaagcaCGGGCCCg -3'
miRNA:   3'- -GGCC-----------UGCUgCUGCGCuGCU---------------GCUCGGG- -5'
23941 3' -58 NC_005262.1 + 2752 0.66 0.68878
Target:  5'- cCCGGAUG-CGcuucaGCaCGGCGGCGGGUgCCg -3'
miRNA:   3'- -GGCCUGCuGC-----UGcGCUGCUGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 50344 0.66 0.68878
Target:  5'- -aGGACGaaGCGccCGCGACGaccGCGAGCg- -3'
miRNA:   3'- ggCCUGC--UGCu-GCGCUGC---UGCUCGgg -5'
23941 3' -58 NC_005262.1 + 36285 0.66 0.68878
Target:  5'- gCGcGCGGCGACGCGAacaccucgguCGACuucggugggGGGCCg -3'
miRNA:   3'- gGCcUGCUGCUGCGCU----------GCUG---------CUCGGg -5'
23941 3' -58 NC_005262.1 + 4849 0.66 0.68878
Target:  5'- uCCGGugGAuucgcuUGuCGCGGCGcagcuugcCGAGCgCCg -3'
miRNA:   3'- -GGCCugCU------GCuGCGCUGCu-------GCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 48883 0.66 0.68878
Target:  5'- aCUGucCGACGuCGUGACcGCaaGGGCCCg -3'
miRNA:   3'- -GGCcuGCUGCuGCGCUGcUG--CUCGGG- -5'
23941 3' -58 NC_005262.1 + 15724 0.66 0.687757
Target:  5'- gCCGGGCGgcucgucGCGGCagguGCGAcCGACGcGCUUg -3'
miRNA:   3'- -GGCCUGC-------UGCUG----CGCU-GCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 16798 0.66 0.685708
Target:  5'- nCGGACGGCGAgcucauggaguuccUGC-ACGAC-AGCCg -3'
miRNA:   3'- gGCCUGCUGCU--------------GCGcUGCUGcUCGGg -5'
23941 3' -58 NC_005262.1 + 17289 0.66 0.682631
Target:  5'- gCGGGCaggGGCGuCGCGGucggagugcucauguCGACGGGCUg -3'
miRNA:   3'- gGCCUG---CUGCuGCGCU---------------GCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 6478 0.66 0.681605
Target:  5'- cCCaGACGGuugccgaucugcuCGAUGCGGCGcucguucugcugcacGCGGGCCg -3'
miRNA:   3'- -GGcCUGCU-------------GCUGCGCUGC---------------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 8195 0.66 0.678523
Target:  5'- gCCGGAaGGCGccGCaGCGAUGauccgcGCGGGCCa -3'
miRNA:   3'- -GGCCUgCUGC--UG-CGCUGC------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 58652 0.66 0.677495
Target:  5'- gCCGGGCGcGCGA-GUucuACGAucaagccCGAGCCCg -3'
miRNA:   3'- -GGCCUGC-UGCUgCGc--UGCU-------GCUCGGG- -5'
23941 3' -58 NC_005262.1 + 53905 0.66 0.677495
Target:  5'- gUGGACGggucugcGCGACGCGcugaaGCaGGCGcAGCUCg -3'
miRNA:   3'- gGCCUGC-------UGCUGCGC-----UG-CUGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 12553 0.66 0.668227
Target:  5'- gCGGcaggucGCGGCGGCGCu-CGuCGAGCUg -3'
miRNA:   3'- gGCC------UGCUGCUGCGcuGCuGCUCGGg -5'
23941 3' -58 NC_005262.1 + 46155 0.66 0.668227
Target:  5'- gCGGcgccucaacGCGAucucCGACGCGACGGcCGAGgCg -3'
miRNA:   3'- gGCC---------UGCU----GCUGCGCUGCU-GCUCgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.