miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 54013 0.66 0.668227
Target:  5'- --cGACGACGAgGCGAUGcugcCGAaCCCa -3'
miRNA:   3'- ggcCUGCUGCUgCGCUGCu---GCUcGGG- -5'
23941 3' -58 NC_005262.1 + 12553 0.66 0.668227
Target:  5'- gCGGcaggucGCGGCGGCGCu-CGuCGAGCUg -3'
miRNA:   3'- gGCC------UGCUGCUGCGcuGCuGCUCGGg -5'
23941 3' -58 NC_005262.1 + 47285 0.66 0.668227
Target:  5'- aCGGACGccGCGGCGaaGAuCGGCGAGgCa -3'
miRNA:   3'- gGCCUGC--UGCUGCg-CU-GCUGCUCgGg -5'
23941 3' -58 NC_005262.1 + 6262 0.66 0.668227
Target:  5'- aCCGGuACGACcuGAuCGCGGuCGAU--GCCCg -3'
miRNA:   3'- -GGCC-UGCUG--CU-GCGCU-GCUGcuCGGG- -5'
23941 3' -58 NC_005262.1 + 46155 0.66 0.668227
Target:  5'- gCGGcgccucaacGCGAucucCGACGCGACGGcCGAGgCg -3'
miRNA:   3'- gGCC---------UGCU----GCUGCGCUGCU-GCUCgGg -5'
23941 3' -58 NC_005262.1 + 28874 0.66 0.667195
Target:  5'- aCGGACGAgaugcuggGACGC-ACGACGAacgcaguGUCCg -3'
miRNA:   3'- gGCCUGCUg-------CUGCGcUGCUGCU-------CGGG- -5'
23941 3' -58 NC_005262.1 + 6691 0.66 0.667195
Target:  5'- aCUGGAgccCGuCGACGUucuucacuuccauGAUGcCGGGCCCg -3'
miRNA:   3'- -GGCCU---GCuGCUGCG-------------CUGCuGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 18557 0.67 0.6579
Target:  5'- gCCGGuCGcCGAguUGcCGGCGuucaggcCGAGCCCg -3'
miRNA:   3'- -GGCCuGCuGCU--GC-GCUGCu------GCUCGGG- -5'
23941 3' -58 NC_005262.1 + 27561 0.67 0.6579
Target:  5'- cCCGG-CGAgGACGCcGCGcagcGCGAgaaGCCUg -3'
miRNA:   3'- -GGCCuGCUgCUGCGcUGC----UGCU---CGGG- -5'
23941 3' -58 NC_005262.1 + 47641 0.67 0.6579
Target:  5'- gCCGGAgGACaagaaGCGCGagGCGAuCGAGCa- -3'
miRNA:   3'- -GGCCUgCUGc----UGCGC--UGCU-GCUCGgg -5'
23941 3' -58 NC_005262.1 + 24785 0.67 0.647552
Target:  5'- gCCGGGCGAgcacuuCGAcauCGCGAagggcaaGcGCGAGCUCg -3'
miRNA:   3'- -GGCCUGCU------GCU---GCGCUg------C-UGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 47437 0.67 0.647552
Target:  5'- gCCGaacGCGGCGGCGCcgaucagcGCGcCGAGCCa -3'
miRNA:   3'- -GGCc--UGCUGCUGCGc-------UGCuGCUCGGg -5'
23941 3' -58 NC_005262.1 + 1691 0.67 0.647552
Target:  5'- uCCGcGACG-CGGuugcCGCGGCGGCGAcGCa- -3'
miRNA:   3'- -GGC-CUGCuGCU----GCGCUGCUGCU-CGgg -5'
23941 3' -58 NC_005262.1 + 52305 0.67 0.647552
Target:  5'- gCCGagcuCGGCGACGCGgcccaugugcucGCGcGCGAGCgCg -3'
miRNA:   3'- -GGCcu--GCUGCUGCGC------------UGC-UGCUCGgG- -5'
23941 3' -58 NC_005262.1 + 49947 0.67 0.647552
Target:  5'- nCGGA---UGGCGUGACGuuCGAGCCg -3'
miRNA:   3'- gGCCUgcuGCUGCGCUGCu-GCUCGGg -5'
23941 3' -58 NC_005262.1 + 54550 0.67 0.647552
Target:  5'- uCCGGccaGCGACGuCGCcGCGuucGCGAGCg- -3'
miRNA:   3'- -GGCC---UGCUGCuGCGcUGC---UGCUCGgg -5'
23941 3' -58 NC_005262.1 + 23052 0.67 0.647552
Target:  5'- gCCGGAUacugcauCGACGCGAUacCGAacccGCCCg -3'
miRNA:   3'- -GGCCUGcu-----GCUGCGCUGcuGCU----CGGG- -5'
23941 3' -58 NC_005262.1 + 53842 0.67 0.647552
Target:  5'- aCCGG-CG-CGGCGCGgACGGCaAGCa- -3'
miRNA:   3'- -GGCCuGCuGCUGCGC-UGCUGcUCGgg -5'
23941 3' -58 NC_005262.1 + 34224 0.67 0.637192
Target:  5'- uUCGGGCGAC-ACGCu-CGACauGGGCgCCg -3'
miRNA:   3'- -GGCCUGCUGcUGCGcuGCUG--CUCG-GG- -5'
23941 3' -58 NC_005262.1 + 4132 0.67 0.637192
Target:  5'- gCCGGGCauaaaaaaACGGCGCcGCGugGcGCCg -3'
miRNA:   3'- -GGCCUGc-------UGCUGCGcUGCugCuCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.