miRNA display CGI


Results 61 - 80 of 275 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 30417 0.67 0.637192
Target:  5'- gCUGGGCGGCGuCGaCGAUcACG-GCCg -3'
miRNA:   3'- -GGCCUGCUGCuGC-GCUGcUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 4091 0.67 0.637192
Target:  5'- gCCGG-CGACGuagcgcccGCGUGGCGGCacGCCg -3'
miRNA:   3'- -GGCCuGCUGC--------UGCGCUGCUGcuCGGg -5'
23941 3' -58 NC_005262.1 + 4132 0.67 0.637192
Target:  5'- gCCGGGCauaaaaaaACGGCGCcGCGugGcGCCg -3'
miRNA:   3'- -GGCCUGc-------UGCUGCGcUGCugCuCGGg -5'
23941 3' -58 NC_005262.1 + 34224 0.67 0.637192
Target:  5'- uUCGGGCGAC-ACGCu-CGACauGGGCgCCg -3'
miRNA:   3'- -GGCCUGCUGcUGCGcuGCUG--CUCG-GG- -5'
23941 3' -58 NC_005262.1 + 30569 0.67 0.637192
Target:  5'- -aGGACGACGGCaGCaagGACGGCaAGaCCg -3'
miRNA:   3'- ggCCUGCUGCUG-CG---CUGCUGcUCgGG- -5'
23941 3' -58 NC_005262.1 + 48043 0.67 0.629937
Target:  5'- gCCGGcCG-CGcccgcaaGCGCGucggucgcaccugccGCGACGAGCCg -3'
miRNA:   3'- -GGCCuGCuGC-------UGCGC---------------UGCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 59445 0.67 0.626828
Target:  5'- -gGGGCuuACGAuCGCGACGGCcgauggacGGCCCg -3'
miRNA:   3'- ggCCUGc-UGCU-GCGCUGCUGc-------UCGGG- -5'
23941 3' -58 NC_005262.1 + 60601 0.67 0.626828
Target:  5'- cCCGGcgauacagggcACGGCGAacgccaUGCGcacgcuggcgaGCGGCGAGCaCCg -3'
miRNA:   3'- -GGCC-----------UGCUGCU------GCGC-----------UGCUGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 17244 0.67 0.626828
Target:  5'- gUGGGCGucGCGGgaGCGGCGGCcGGCgCCg -3'
miRNA:   3'- gGCCUGC--UGCUg-CGCUGCUGcUCG-GG- -5'
23941 3' -58 NC_005262.1 + 17044 0.67 0.625792
Target:  5'- cCUGuACGAcCGGCGUGGCGGCGAucgauccggucguGCCg -3'
miRNA:   3'- -GGCcUGCU-GCUGCGCUGCUGCU-------------CGGg -5'
23941 3' -58 NC_005262.1 + 4658 0.67 0.616468
Target:  5'- gCGcGCGGCGACGCGGCccGGCcGGUUCg -3'
miRNA:   3'- gGCcUGCUGCUGCGCUG--CUGcUCGGG- -5'
23941 3' -58 NC_005262.1 + 2255 0.67 0.616468
Target:  5'- cUCGGGCcGCGu--CGAUGACG-GCCCg -3'
miRNA:   3'- -GGCCUGcUGCugcGCUGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 6549 0.67 0.616468
Target:  5'- aCGGGCuuCGGCGUGuugccgcCGACGAGCg- -3'
miRNA:   3'- gGCCUGcuGCUGCGCu------GCUGCUCGgg -5'
23941 3' -58 NC_005262.1 + 23713 0.67 0.616468
Target:  5'- aCGGuCGACcACGCGGCGAUca-CCCu -3'
miRNA:   3'- gGCCuGCUGcUGCGCUGCUGcucGGG- -5'
23941 3' -58 NC_005262.1 + 28402 0.67 0.616468
Target:  5'- cCCGaACGACGA-GCGGC-ACGuGCUCg -3'
miRNA:   3'- -GGCcUGCUGCUgCGCUGcUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 36844 0.67 0.616468
Target:  5'- aUGGugcCGACGACaCGACGGCG-GUUCa -3'
miRNA:   3'- gGCCu--GCUGCUGcGCUGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 53046 0.67 0.616468
Target:  5'- aCGGGCGuggaguACGACGCGcUGACcGGCgCg -3'
miRNA:   3'- gGCCUGC------UGCUGCGCuGCUGcUCGgG- -5'
23941 3' -58 NC_005262.1 + 32311 0.67 0.616468
Target:  5'- gCGGACGuCGACgGCGAgguCGGCGGaCCa -3'
miRNA:   3'- gGCCUGCuGCUG-CGCU---GCUGCUcGGg -5'
23941 3' -58 NC_005262.1 + 17480 0.67 0.610257
Target:  5'- uCCaGGACGaagcgcgcgccgcgcGCGACGCGuCGAuCGgcAGCCUg -3'
miRNA:   3'- -GG-CCUGC---------------UGCUGCGCuGCU-GC--UCGGG- -5'
23941 3' -58 NC_005262.1 + 30825 0.67 0.60612
Target:  5'- cCCGGugcgcgucuCGGCGACGCGcaucguCGACGucgggaugacGGCCg -3'
miRNA:   3'- -GGCCu--------GCUGCUGCGCu-----GCUGC----------UCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.