miRNA display CGI


Results 81 - 100 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 57267 0.67 0.60612
Target:  5'- cCCGuGAUccGCGAgCGUGACGGCGAGgUCg -3'
miRNA:   3'- -GGC-CUGc-UGCU-GCGCUGCUGCUCgGG- -5'
23941 3' -58 NC_005262.1 + 52139 0.67 0.60612
Target:  5'- gCCGGccaGCGugcagcGCGACGcCGGCGccgcCGAGCCg -3'
miRNA:   3'- -GGCC---UGC------UGCUGC-GCUGCu---GCUCGGg -5'
23941 3' -58 NC_005262.1 + 7743 0.67 0.60612
Target:  5'- -aGGAUGAUGuccUGCcccuucuGCGGCGGGCCCu -3'
miRNA:   3'- ggCCUGCUGCu--GCGc------UGCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 51815 0.67 0.60612
Target:  5'- cUCGG-CGACGacuucaGCGCGGcCGACGuGCgCg -3'
miRNA:   3'- -GGCCuGCUGC------UGCGCU-GCUGCuCGgG- -5'
23941 3' -58 NC_005262.1 + 49223 0.67 0.60612
Target:  5'- gCGGccuCGGCGGCGCGcaguccGCGcGCGAGgUCCg -3'
miRNA:   3'- gGCCu--GCUGCUGCGC------UGC-UGCUC-GGG- -5'
23941 3' -58 NC_005262.1 + 61462 0.67 0.60612
Target:  5'- gCGGACGGCGAaGCGcuaGACGAcaucuucgcgcgGCCg -3'
miRNA:   3'- gGCCUGCUGCUgCGCug-CUGCU------------CGGg -5'
23941 3' -58 NC_005262.1 + 30825 0.67 0.60612
Target:  5'- cCCGGugcgcgucuCGGCGACGCGcaucguCGACGucgggaugacGGCCg -3'
miRNA:   3'- -GGCCu--------GCUGCUGCGCu-----GCUGC----------UCGGg -5'
23941 3' -58 NC_005262.1 + 59724 0.67 0.60612
Target:  5'- gCCGGcaagguguacaACGugGugGaUGGCGGCG-GCCa -3'
miRNA:   3'- -GGCC-----------UGCugCugC-GCUGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 30160 0.67 0.605086
Target:  5'- gCGGAUGcCGACGCGAagcugaaggagauCGGCGAGa-- -3'
miRNA:   3'- gGCCUGCuGCUGCGCU-------------GCUGCUCggg -5'
23941 3' -58 NC_005262.1 + 63697 0.67 0.603019
Target:  5'- gCCGGugacaugcgcagaaGCGuGCGGCGCGGCcgacuucuucGCGAGCCg -3'
miRNA:   3'- -GGCC--------------UGC-UGCUGCGCUGc---------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 8579 0.68 0.595792
Target:  5'- gCGGccugcGCGACGAaGCGACGGCGGuuGUgCg -3'
miRNA:   3'- gGCC-----UGCUGCUgCGCUGCUGCU--CGgG- -5'
23941 3' -58 NC_005262.1 + 58279 0.68 0.595792
Target:  5'- uCUGGGCGACGACGaucccggucCGGuCGuCGcGGCCUa -3'
miRNA:   3'- -GGCCUGCUGCUGC---------GCU-GCuGC-UCGGG- -5'
23941 3' -58 NC_005262.1 + 28790 0.68 0.595792
Target:  5'- aUGGACGuCGAcCGUGACcuCGcGCCCg -3'
miRNA:   3'- gGCCUGCuGCU-GCGCUGcuGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 35422 0.68 0.595792
Target:  5'- cCCGG-CGACGuguuCGUGuuCGACGucGGCUCg -3'
miRNA:   3'- -GGCCuGCUGCu---GCGCu-GCUGC--UCGGG- -5'
23941 3' -58 NC_005262.1 + 11161 0.68 0.595792
Target:  5'- aCGGGCGGCccUGCGAcaacgcCGACGAcGCCg -3'
miRNA:   3'- gGCCUGCUGcuGCGCU------GCUGCU-CGGg -5'
23941 3' -58 NC_005262.1 + 5176 0.68 0.595792
Target:  5'- aCGGcCGGCGuCGCgGGCG-CGGGCgCg -3'
miRNA:   3'- gGCCuGCUGCuGCG-CUGCuGCUCGgG- -5'
23941 3' -58 NC_005262.1 + 54285 0.68 0.595792
Target:  5'- aCCu--CGACGACGUGGCGcgccucucgaacAUGAGCCg -3'
miRNA:   3'- -GGccuGCUGCUGCGCUGC------------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 59687 0.68 0.595792
Target:  5'- gUGGACGAuCGGCGUGcCGccacGCGGGCgCu -3'
miRNA:   3'- gGCCUGCU-GCUGCGCuGC----UGCUCGgG- -5'
23941 3' -58 NC_005262.1 + 17167 0.68 0.595792
Target:  5'- gCCGGcaaggccgcgcGCGAgGACGCGACcGCGuucagcaaGGCCg -3'
miRNA:   3'- -GGCC-----------UGCUgCUGCGCUGcUGC--------UCGGg -5'
23941 3' -58 NC_005262.1 + 15584 0.68 0.595792
Target:  5'- gCUGGA-GGCGcGCGCGcGCGAgGAGCgCg -3'
miRNA:   3'- -GGCCUgCUGC-UGCGC-UGCUgCUCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.