miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 5880 0.66 0.709141
Target:  5'- gCGGAUGAagcgauCGACGuCGAUGuCGGGCg- -3'
miRNA:   3'- gGCCUGCU------GCUGC-GCUGCuGCUCGgg -5'
23941 3' -58 NC_005262.1 + 6262 0.66 0.668227
Target:  5'- aCCGGuACGACcuGAuCGCGGuCGAU--GCCCg -3'
miRNA:   3'- -GGCC-UGCUG--CU-GCGCU-GCUGcuCGGG- -5'
23941 3' -58 NC_005262.1 + 6459 0.72 0.368319
Target:  5'- uCCGG-CGA-GACGCcggcaucGACG-CGGGCCCa -3'
miRNA:   3'- -GGCCuGCUgCUGCG-------CUGCuGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 6478 0.66 0.681605
Target:  5'- cCCaGACGGuugccgaucugcuCGAUGCGGCGcucguucugcugcacGCGGGCCg -3'
miRNA:   3'- -GGcCUGCU-------------GCUGCGCUGC---------------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 6549 0.67 0.616468
Target:  5'- aCGGGCuuCGGCGUGuugccgcCGACGAGCg- -3'
miRNA:   3'- gGCCUGcuGCUGCGCu------GCUGCUCGgg -5'
23941 3' -58 NC_005262.1 + 6691 0.66 0.667195
Target:  5'- aCUGGAgccCGuCGACGUucuucacuuccauGAUGcCGGGCCCg -3'
miRNA:   3'- -GGCCU---GCuGCUGCG-------------CUGCuGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 6773 0.75 0.230093
Target:  5'- gCCGGGC-ACGAUGCcgauGAucuugaagucgaaCGACGAGCCCa -3'
miRNA:   3'- -GGCCUGcUGCUGCG----CU-------------GCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 7024 0.7 0.438491
Target:  5'- uUCGGugGACGucagguccuucGCGCGcAUcGCGAGCCa -3'
miRNA:   3'- -GGCCugCUGC-----------UGCGC-UGcUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 7523 0.74 0.280009
Target:  5'- aUCGGGCagguucGGCGGCGCGuCGGCGcGCUCg -3'
miRNA:   3'- -GGCCUG------CUGCUGCGCuGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 7545 0.7 0.475849
Target:  5'- uCCGuGAaGAUGAUGUG-CGACGcGCCCu -3'
miRNA:   3'- -GGC-CUgCUGCUGCGCuGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 7625 0.73 0.320796
Target:  5'- aCCGGACGuuggccgaauguCGACGcCGGCGGCGAcgGCUa -3'
miRNA:   3'- -GGCCUGCu-----------GCUGC-GCUGCUGCU--CGGg -5'
23941 3' -58 NC_005262.1 + 7743 0.67 0.60612
Target:  5'- -aGGAUGAUGuccUGCcccuucuGCGGCGGGCCCu -3'
miRNA:   3'- ggCCUGCUGCu--GCGc------UGCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 7881 0.73 0.314915
Target:  5'- gCCGGACGGuCGACGUacuGCG-CGAGCUg -3'
miRNA:   3'- -GGCCUGCU-GCUGCGc--UGCuGCUCGGg -5'
23941 3' -58 NC_005262.1 + 8144 0.69 0.504876
Target:  5'- aCCGG-CGugccgGACGCGGCcACGAGCgCg -3'
miRNA:   3'- -GGCCuGCug---CUGCGCUGcUGCUCGgG- -5'
23941 3' -58 NC_005262.1 + 8195 0.66 0.678523
Target:  5'- gCCGGAaGGCGccGCaGCGAUGauccgcGCGGGCCa -3'
miRNA:   3'- -GGCCUgCUGC--UG-CGCUGC------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 8299 0.66 0.69899
Target:  5'- gUGGAauuCGuCGACGaacaGACGGuCGAcGCCCa -3'
miRNA:   3'- gGCCU---GCuGCUGCg---CUGCU-GCU-CGGG- -5'
23941 3' -58 NC_005262.1 + 8579 0.68 0.595792
Target:  5'- gCGGccugcGCGACGAaGCGACGGCGGuuGUgCg -3'
miRNA:   3'- gGCC-----UGCUGCUgCGCUGCUGCU--CGgG- -5'
23941 3' -58 NC_005262.1 + 8896 0.71 0.408971
Target:  5'- aCCGcACGACGguccgcucuuggguGCGCGGCGAaaaGcGCCCg -3'
miRNA:   3'- -GGCcUGCUGC--------------UGCGCUGCUg--CuCGGG- -5'
23941 3' -58 NC_005262.1 + 9168 0.71 0.429416
Target:  5'- gCCGGACugcuCGGCG-GACcACGAGCCg -3'
miRNA:   3'- -GGCCUGcu--GCUGCgCUGcUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 9362 0.75 0.225036
Target:  5'- uCCGGuCGGCGcGCGCGGCGgccugcgccuccGCGAGCUUg -3'
miRNA:   3'- -GGCCuGCUGC-UGCGCUGC------------UGCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.