miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23941 3' -58 NC_005262.1 + 9816 0.69 0.504876
Target:  5'- cUCGGGCGACcgcuuCGUGAUGAUGAggauGUCCa -3'
miRNA:   3'- -GGCCUGCUGcu---GCGCUGCUGCU----CGGG- -5'
23941 3' -58 NC_005262.1 + 10197 0.66 0.69899
Target:  5'- gCCGaGCGGCGACGCGGuuGCGAacaUCCg -3'
miRNA:   3'- -GGCcUGCUGCUGCGCUgcUGCUc--GGG- -5'
23941 3' -58 NC_005262.1 + 10461 0.73 0.329771
Target:  5'- gCCGGgcggaagccGCGACGACaGCGGCGACcAGCa- -3'
miRNA:   3'- -GGCC---------UGCUGCUG-CGCUGCUGcUCGgg -5'
23941 3' -58 NC_005262.1 + 10624 0.68 0.585491
Target:  5'- --cGACGACgGACGCGAagGGCGGGUugCCg -3'
miRNA:   3'- ggcCUGCUG-CUGCGCUg-CUGCUCG--GG- -5'
23941 3' -58 NC_005262.1 + 11161 0.68 0.595792
Target:  5'- aCGGGCGGCccUGCGAcaacgcCGACGAcGCCg -3'
miRNA:   3'- gGCCUGCUGcuGCGCU------GCUGCU-CGGg -5'
23941 3' -58 NC_005262.1 + 11640 0.66 0.719226
Target:  5'- aUCGGcuCGGCGGCGcCGGCGuCGcGCUg -3'
miRNA:   3'- -GGCCu-GCUGCUGC-GCUGCuGCuCGGg -5'
23941 3' -58 NC_005262.1 + 12222 0.69 0.501938
Target:  5'- aUGGGCGGCGcgcucaagcuccgcGCGCGACcacgugguacGCGAGCCg -3'
miRNA:   3'- gGCCUGCUGC--------------UGCGCUGc---------UGCUCGGg -5'
23941 3' -58 NC_005262.1 + 12263 0.72 0.369137
Target:  5'- gUCGGGCaccuguCGAuCGCGGcCGGCGAGCCg -3'
miRNA:   3'- -GGCCUGcu----GCU-GCGCU-GCUGCUCGGg -5'
23941 3' -58 NC_005262.1 + 12430 0.7 0.447675
Target:  5'- gCCGGcgucGCgGACGGCGCGGUGcCGAGCUg -3'
miRNA:   3'- -GGCC----UG-CUGCUGCGCUGCuGCUCGGg -5'
23941 3' -58 NC_005262.1 + 12553 0.66 0.668227
Target:  5'- gCGGcaggucGCGGCGGCGCu-CGuCGAGCUg -3'
miRNA:   3'- gGCC------UGCUGCUGCGcuGCuGCUCGGg -5'
23941 3' -58 NC_005262.1 + 12558 0.7 0.466357
Target:  5'- aCCGua-GcCGGCGCGcAUGAgGAGCCCg -3'
miRNA:   3'- -GGCcugCuGCUGCGC-UGCUgCUCGGG- -5'
23941 3' -58 NC_005262.1 + 12592 0.66 0.69899
Target:  5'- gCCGGcgaGGCGuCGCgGAUGAgCGcGCCCu -3'
miRNA:   3'- -GGCCug-CUGCuGCG-CUGCU-GCuCGGG- -5'
23941 3' -58 NC_005262.1 + 12657 0.68 0.56398
Target:  5'- gCGcGCG-CGGCGCG-CGGCGAacccugcGCCCg -3'
miRNA:   3'- gGCcUGCuGCUGCGCuGCUGCU-------CGGG- -5'
23941 3' -58 NC_005262.1 + 12915 0.72 0.361011
Target:  5'- gCUGGACGACGACaaccuGCG-CGGCGcGCUg -3'
miRNA:   3'- -GGCCUGCUGCUG-----CGCuGCUGCuCGGg -5'
23941 3' -58 NC_005262.1 + 13363 0.76 0.214135
Target:  5'- gCGGcACGACGACGUGcACG-CG-GCCCu -3'
miRNA:   3'- gGCC-UGCUGCUGCGC-UGCuGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 13794 0.69 0.491231
Target:  5'- gUGGGCGcCGGCGCGGCuucaucggcgggaGCGGGCgCCg -3'
miRNA:   3'- gGCCUGCuGCUGCGCUGc------------UGCUCG-GG- -5'
23941 3' -58 NC_005262.1 + 14002 0.75 0.254354
Target:  5'- gCCGGACGGugcaggggcgucCGGCGCGgcaGCGGCcgGAGCCUc -3'
miRNA:   3'- -GGCCUGCU------------GCUGCGC---UGCUG--CUCGGG- -5'
23941 3' -58 NC_005262.1 + 14333 0.71 0.429416
Target:  5'- gCUGGGCGGCGAaGUuGCGACGuGCUUg -3'
miRNA:   3'- -GGCCUGCUGCUgCGcUGCUGCuCGGG- -5'
23941 3' -58 NC_005262.1 + 14456 0.73 0.307679
Target:  5'- cCCGGACGGCuacaccGAUGUcccguaucACGGCGAGCCUg -3'
miRNA:   3'- -GGCCUGCUG------CUGCGc-------UGCUGCUCGGG- -5'
23941 3' -58 NC_005262.1 + 15584 0.68 0.595792
Target:  5'- gCUGGA-GGCGcGCGCGcGCGAgGAGCgCg -3'
miRNA:   3'- -GGCCUgCUGC-UGCGC-UGCUgCUCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.